Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00858 ATGGGTTTGGTTGAAAAGAGTCCAAAGAATCATCACTTTCATAGACACCACCATCTTCAACATAAGCATGAGTTTAAAGGTGTTCCAAAAGGGTTTATGGCAATAAAAGTTGGTTTAGGAGAAGAACAACAAAGGTTTGTTGTACCTGTTTTGTACTTCAATCATCCTCTTTTCATTCAACTATTGAAAGAGGCTGAAGAAGAATATGGATTTGATCAAAAAGGAACAATTACTATTCCTTGCCATGTTGAGCAATTCACCAACGTTCGTGGTTTGATTGATAGAGACAAGAATCTTCATCAACATGTTGGTTGTTTTGGTTTATGA 327 0.3547 MGLVEKSPKNHHFHRHHHLQHKHEFKGVPKGFMAIKVGLGEEQQRFVVPVLYFNHPLFIQLLKEAEEEYGFDQKGTITIPCHVEQFTNVRGLIDRDKNLHQHVGCFGL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00858 108 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g00858 108 Pfam Auxin responsive protein 22 89 IPR003676 GO:0009733
Tsu08g00858 108 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 16 102 - -
Tsu08g00858 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 16 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00858 Tsu-Chr8 9350193 9350972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00858 28 86 Calmodulin-binding Proteins AT5G20810 55.932 3.53e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00858 - K14488 gmx:111188139 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00858 08 9350193 9350972 Tsu08g00858 08 9350193 9350972 ECH
Tsu08g00858 08 9350193 9350972 Tsu07g04718 07 51555099 51555877 ECH
Tsu07g04717 07 51552106 51553130 Tsu08g00858 08 9350193 9350972 PCT