Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00856 ATGGAAGATTTCATCATTTCACCTTCTTCATCGTCCTCTATGATTTCACTCCTCCATGAAAACCCTTcaccacaaacacaaacacaaacccttcaagaaaaacttcaatttttactCCAAAACCAATCTGAAAATTGGGTCTATGCCATTTTTTGGCAAACAACTAAAGATGAAAAAGGTAACCCTTTCTTATCTTGGGGTGAAGGTCATTTCCAAGGAACTAAAGAAACAACTTCAAAAAAACGAAaggacacggacactgacacgtgtaCAAATGGTGATGCTGAATGGTTCTATGTTATGTCTTTGAGTCGAAATTTTAGTGTCGGTAattcttcttcaatttctttaCCGGGTAAATCTTTTGCTTTAGATTCAGTTCTTTGGTTAAATAGCAAACATGAActtcaattttataattgtgAGAGATCCAACGAAGCACACGTGCACGGAATTGAAACGTTAATTTGTATTCCAACAACTAACGGTGTAATCGAGATGGGTTCTTATGAAAATATCCAACAAAATTGGAACCTCGTACACCAAACCAAATCTATATTCCAATCAACATCGTCAGAATCGAACTCAAAATTAGATCTTATCTCCACCACCCCACTTGACAAAATCCAAACTTTCGACCAAAATATCTCATTCTCTGACATGGGTTTCATCTCCGGCGCCGGCGAAGAAACCGATGAGAAGCAAAAAATGatgaacaaaaaattacaacaaaaattTAACATTGTTGTTTCACCAAGTTATGTTGATTCTGAACATTCTGATTCAGAATATTGTCCACAGTTAGAAAcatcaccaacaacaacaacaacaaaaaaaaattattgtcttgATGAgaaaagagaattgaagaagaGAGGAAGAAAACCATTAACAGGAACAACACAAACACCAATGAACCATGTAGAAGCAGAGAGACAGAGGAGAGAGAAACTAAACCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGAATGGATAAAGCTTCTTTGTTATCAGATGCAGTAGATTACATCAACGAGTTAAAAGCAAAGATTAAAGATTTCGAATCTGAGAAGAAAAGGGAATCTAAAAGAGTGAAGATGGAAACTATGGATAATCAAAGTACAGTGACAACTTCAACTGTTGTGGATCAAAAAAGACATTGTAATAGTGTTAATGCTTTGGAAATTGATGTGAAGATTATAGGAAATGATGCTATGATTAGAGTTCAATCAGAGAATGTTAATCATCCTGGTGCAAGATTAATGAGTGCATTGAAGGATTTGGAGTTTCAGGTACATCATGCTAGTATATCTTGTGTTAATGAAGTTATGGTTCAAGATGTTGTTGTTCAAGTTCCAAAAGAGATGAGGAATGAAGACAGTCTTAAATCTGCAATTCTCATGAGATTAGATGATcaagaatga 1437 0.3076 MEDFIISPSSSSSMISLLHENPSPQTQTQTLQEKLQFLLQNQSENWVYAIFWQTTKDEKGNPFLSWGEGHFQGTKETTSKKRKDTDTDTCTNGDAEWFYVMSLSRNFSVGNSSSISLPGKSFALDSVLWLNSKHELQFYNCERSNEAHVHGIETLICIPTTNGVIEMGSYENIQQNWNLVHQTKSIFQSTSSESNSKLDLISTTPLDKIQTFDQNISFSDMGFISGAGEETDEKQKMMNKKLQQKFNIVVSPSYVDSEHSDSEYCPQLETSPTTTTTKKNYCLDEKRELKKRGRKPLTGTTQTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIKDFESEKKRESKRVKMETMDNQSTVTTSTVVDQKRHCNSVNALEIDVKIIGNDAMIRVQSENVNHPGARLMSALKDLEFQVHHASISCVNEVMVQDVVVQVPKEMRNEDSLKSAILMRLDDQE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00856 478 MobiDBLite consensus disorder prediction 66 87 - -
Tsu08g00856 478 SMART finulus 308 357 IPR011598 GO:0046983
Tsu08g00856 478 PANTHER TRANSCRIPTION FACTOR BHLH14 1 474 - -
Tsu08g00856 478 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 187 IPR025610 -
Tsu08g00856 478 Gene3D - 299 380 IPR036638 GO:0046983
Tsu08g00856 478 Pfam Helix-loop-helix DNA-binding domain 306 351 IPR011598 GO:0046983
Tsu08g00856 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Tsu08g00856 478 PANTHER MYC 1 474 IPR045084 GO:0003700|GO:0006355
Tsu08g00856 478 Coils Coil 341 368 - -
Tsu08g00856 478 MobiDBLite consensus disorder prediction 366 385 - -
Tsu08g00856 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 366 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00856 Tsu-Chr8 9300241 9302104 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00856 1 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 31.986 1.83e-83 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g00856 bHLH-MYC_N 2.7e-43 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00856 - K13422 var:108347008 479.559