Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00852 ATGGAAGACTTCATCATTTCaccttcttcatcttcctctaTGATTTCACTCCTCCATGAAAACCCTTcaccacaaaaacaaacacaatcaCTTCAACAAAAGCTTCAATTTTTACTCCAAACCCAATCCGATAATTGGGTCTATGCCATTTATTGGCAAACaacaaaagatgaaaaaggTAACACTTTCTTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAACAAAGTTACAAGAACTTCAAACAAACGAAACGACACGGACACTGTCACTGGCACATGTACAAACGAAGATGCTGAATGGTTCTATGTTATGTCGATTACTCGAAATTTTTGTGTTGGTAattcttcttcaatttctttaCCCAGTAAAGCTTTTGCTTTAGATTCAGTTCTTTGGTTAAATAGCAAACTTGAActtcaattttataattgtgAAAGATCCAATGAAGCACACATGCACGGAATCGAAACCCTAATTTGTATTCCAACAACTAACGGCGTAATTGAAATGGGTTCTTATGAAAATATCCAACAAAATTGGAACCTCGTACACCAAACCAAATCTATGTTCCAATCAACATGGTCCGAATCAAACTCAAAATTAGAACTCACCTCCACCACCCCACTTGACAAAATCCAAACTTTCGACCAAAACATTTCATTCTCGGAAATGGGTCTAGTCTCTGGTACCACGTACGCTGGTACCAAAGATGAAACCGAGGagacacaaaaaaatatgaacaaaagtTTGCAACAAAAGCATAACATTGTTGTTTCATCATGTTATGTTGATTCTGAATATTCTGATTCAGAATATTGTCCACAAttagcagcaacaacaacaaaaaatgattCTCTTGACGAgaaaagagaattgaagaagaGAGGAAGAAAACCTTTAACAGGAACAATTCAAAGACCAATGCACCATGTAGAAGCAGAGAGACAAAGGAGAGAGAAACTAAACCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGAATGGATAAAGCTTCTTTGTTATCAGATGCAGTAGATTACATCAACGAGTTAAAAGCAAAGATTAAAGATTTCGAATCTGAGAAAAAAAGAGAATCTAAAAGAGTGAAGATGGAAACTATGGATAATCAAAGTACAATGACAACTTCAACTGTTGTGGATCAAAAAAGGCATTGTAATGCTTTGGAAATTAATGTGAAGATTATTGGAAATGATGCTATGATTAGAGTTCAATCAGAGAATGTTAATCATCCTGGTGCAAGATTAATGAGTGCATTGAAGGATTTGGAGTTCCAAGTACATCATGCTAGTATATCTTGTGTTAATGAAGTTATGGTTCaagatgttgttgttgttcaagtTCCAAAAGAGATGAGGAATGAAGACAGTCTTAAATCTGCAATTCTCATGAGATTAAATGATTAG 1437 0.3145 MEDFIISPSSSSSMISLLHENPSPQKQTQSLQQKLQFLLQTQSDNWVYAIYWQTTKDEKGNTFLSWGEGHFQGTNKVTRTSNKRNDTDTVTGTCTNEDAEWFYVMSITRNFCVGNSSSISLPSKAFALDSVLWLNSKLELQFYNCERSNEAHMHGIETLICIPTTNGVIEMGSYENIQQNWNLVHQTKSMFQSTWSESNSKLELTSTTPLDKIQTFDQNISFSEMGLVSGTTYAGTKDETEETQKNMNKSLQQKHNIVVSSCYVDSEYSDSEYCPQLAATTTKNDSLDEKRELKKRGRKPLTGTIQRPMHHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIKDFESEKKRESKRVKMETMDNQSTMTTSTVVDQKRHCNALEINVKIIGNDAMIRVQSENVNHPGARLMSALKDLEFQVHHASISCVNEVMVQDVVVVQVPKEMRNEDSLKSAILMRLND 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00852 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Tsu08g00852 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 366 IPR036638 GO:0046983
Tsu08g00852 478 Pfam Helix-loop-helix DNA-binding domain 309 355 IPR011598 GO:0046983
Tsu08g00852 478 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 191 IPR025610 -
Tsu08g00852 478 PANTHER MYC 1 476 IPR045084 GO:0003700|GO:0006355
Tsu08g00852 478 Coils Coil 345 372 - -
Tsu08g00852 478 Gene3D - 302 385 IPR036638 GO:0046983
Tsu08g00852 478 PANTHER TRANSCRIPTION FACTOR BHLH14 1 476 - -
Tsu08g00852 478 SMART finulus 312 361 IPR011598 GO:0046983
Tsu08g00852 478 MobiDBLite consensus disorder prediction 370 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00852 Tsu-Chr8 9271027 9272463 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00852 16 455 EF-hand Containing Proteins AT5G46830 33.996 6.11e-63 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g00852 bHLH-MYC_N 7.3e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00852 - K13422 var:108347008 475.707