Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00849 ATGGAAGATTTCATCATTTCACCTTCTTCATATTCCTCTATGATTTCACACCCCCATGAAAACCCTTcaccacaaacacaaacacaaacccttcaacaaaaacttcaatttttactCCAAAACCAATCCGAAAATTGGGCCTATGCCATTTTTTGGCAAACAACAAAGGATGAAAAAGGTAACACTTTATTATCTTGGGGTGAAGGCCATTTCCAAGGAACCAAGGAAACAAAAACTGCAAAAAAACGAAACGACACAGACACTGACACAGACACGTGCACAAATGGCGATGCTGAATGGTTCTATGTTATGTCGATGGCTCGAAATTTTTGTGTTGGTAATTCTTCTTCCATTTCTTTACCCGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTAAATAGCAAACATGAActtcaattttataattgtgAGAGATCCAATGAAGCACACGTGCACGGAATTGAAACCTTAATTTGTATTCCAACAACTAACGGCGTAGTCGAAATGGGTTCCTATGAAAATATCCCACAAAATTGGAACATCGTACATCAAGCTAAATCTATGTTCCAATCAACATCATCAGAATCAAACTCAAAATTAGATTTGATCTCCACCACCCTACTTGAAAAAAACAACACTTTTGACCAAAACATCTCATTCTCCGAGATGGGTCTCGTCTCAGGTGCCAGAGACACCAGAGACGAAACCGAGGAGACACAAAACATTATCAACAAAATATTGCAACCAAAGCATAACATTGTTGTTTCATCATGTTATGTTGATTCTGAACATTCTGATTCAGAATATTGTCCACAATTAGAAATACCAACAAAAAACGATTCTCTTGATGAAAAAACAGAATTGAAGAAGAGAGGAAGAAAACCATTAACGGGAACAACACAAACACCAATGAACCATGTAGAAGCAGAGAGACAGAGGAGAGAGAAACTAAACCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAATGTTTCAAGGATGGATAAAGCTTCTTTGTTATCAGATGCAGTGGATTATATTAATGAGTTAAAAGCAAAGATTAAAATTTTAGAATCTGAGAGAAAAAAGGAATCTAAAAAAGTGAAGATGGAAACTATGGATAATCAAAGTACAATGACAACTTCAACTGTTGTGGATCAAAAATGGCATTGTAATGCTTTGGAAATTAATGTGAAGATTATTGGAAATGATGCTATGATTAGAGTTCAATCAGAAAATGTTAATCATCCTGGTGCAAGATTAATGAGTGCATTGAAGTATTTGGAGTTTCAAGTACATCATGCTAGTATATCTTGTGTTAATGATGTTATGCTTCAAGATGTTGTTGTTGTACAAGTTCCTAAAGAGATGAGAAATAAAGAGTCTCTGAAATCTGCAATTCTCATGAGATTAGATGATCAGGAGTGA 1431 0.3403 MEDFIISPSSYSSMISHPHENPSPQTQTQTLQQKLQFLLQNQSENWAYAIFWQTTKDEKGNTLLSWGEGHFQGTKETKTAKKRNDTDTDTDTCTNGDAEWFYVMSMARNFCVGNSSSISLPGKAFALDSVLWLNSKHELQFYNCERSNEAHVHGIETLICIPTTNGVVEMGSYENIPQNWNIVHQAKSMFQSTSSESNSKLDLISTTLLEKNNTFDQNISFSEMGLVSGARDTRDETEETQNIINKILQPKHNIVVSSCYVDSEHSDSEYCPQLEIPTKNDSLDEKTELKKRGRKPLTGTTQTPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVDYINELKAKIKILESERKKESKKVKMETMDNQSTMTTSTVVDQKWHCNALEINVKIIGNDAMIRVQSENVNHPGARLMSALKYLEFQVHHASISCVNDVMLQDVVVVQVPKEMRNKESLKSAILMRLDDQE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00849 476 PANTHER TRANSCRIPTION FACTOR BHLH14 1 472 - -
Tsu08g00849 476 Gene3D - 299 381 IPR036638 GO:0046983
Tsu08g00849 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Tsu08g00849 476 PANTHER MYC 1 472 IPR045084 GO:0003700|GO:0006355
Tsu08g00849 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 363 IPR036638 GO:0046983
Tsu08g00849 476 SMART finulus 308 357 IPR011598 GO:0046983
Tsu08g00849 476 Coils Coil 341 368 - -
Tsu08g00849 476 MobiDBLite consensus disorder prediction 281 295 - -
Tsu08g00849 476 MobiDBLite consensus disorder prediction 1 27 - -
Tsu08g00849 476 Pfam Helix-loop-helix DNA-binding domain 306 351 IPR011598 GO:0046983
Tsu08g00849 476 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 31 190 IPR025610 -
Tsu08g00849 476 MobiDBLite consensus disorder prediction 281 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00849 Tsu-Chr8 9243247 9244677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00849 31 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.286 1.45e-60 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g00849 bHLH-MYC_N 3.5e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00849 - K13422 gmx:100804965 477.248