Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00841 ATGATGATGAACAATAAAGTACCACCGAGACCTCGTACTATAGTTGGAAAATACGAGATGGGAAAAACAATTGGTGAAGGAAGTTTTGCTAAAGTTAAGTTAGCAAAGAATGTTGAAAATGGTGATTATGTTGCTATCAAAATTCTTGATCGTAATCATGTGCTTCGTCACAATATGATGGATCAGCTGAAGAGAGAAATTTCAGCTATGAAGATAATTAATCATCCAAATGTTGTTAAAATATTTGAGGTAATGGCAAGCAAAACAAAGATTTACATTGTCTTGGAGTTGGTTAATGGAGGAgaattatttgacaaaattGCTAAAAATGGGAGGCTTAAAGAGGAAGCAGCAAGAAGTTATTTCCAACAACTAATCAATGCAGTTGATTACTGCCATAGTAGAGGCGTGTATCACAGAGATTTGAAGCCAGAGAATCTTCTTTTGGACATAAATGGTGTTCTTAAAGTTTCGGATTTTGGATTAAGTACATACTCACAGCAGgagAATGAACTTCTCCGCACGGCATGCGGAACACCGAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATCTGGTCTTGCGGAGTCATTCTCTTTGTACTTATGGCTGGCTACTTGCCGTTCGACGAGCCGACTACAGTTGCACTTTATCGGAAAATTGGTAGGGCTGAGTTCACATGTCCGCCTTGGTTTTCGCCTGAGGCAAAGAAACTACTCAAGGCTATACTTAACCCGAACCCTCTAACGAGGATAAAAATTCCGGAAATCTTGGAAGATGAATGGTTCAAAAAAGGTTACAAGCCGGCATCTTTTACCGAGGAAGACGGTGTTAATGTAGATGATGTTGCTGCTGCTTTCAATGAATCTAAGGAAAATCTCGTGACAGAGACAAAAGAGAAACCGGTGTCGATGAATGCTTTTGAGCTTATTTCTAGATCACAAAGCTTCAATCTTGAAAATTTGTTTGAGAAGCAAAAGGTGGTTGTAAAGCGCGAAACACATTTCGCTTCACAGTGCCCTGCAAATGAAATTATGTCTAAGATCGAGGAGGCTGCCAAACCTCTCGGATTTAACGTTCACAAGCGAAATTACAAGatgaagctgcaaggtGATAAAAGCGGAAGGAAAGGTCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCTCCCTCCTTGCATATGGTGGAGTTGCGGAAGACGGGCGGCGACACACTAGAGTTTGACAAGTTCTACAGAACATTTTCATCAGGGTTGCAAGACATAGTGTGGCATTCTGACCAAAATTAA 1314 0.395 MMMNNKVPPRPRTIVGKYEMGKTIGEGSFAKVKLAKNVENGDYVAIKILDRNHVLRHNMMDQLKREISAMKIINHPNVVKIFEVMASKTKIYIVLELVNGGELFDKIAKNGRLKEEAARSYFQQLINAVDYCHSRGVYHRDLKPENLLLDINGVLKVSDFGLSTYSQQENELLRTACGTPNYVAPEVLNDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPTTVALYRKIGRAEFTCPPWFSPEAKKLLKAILNPNPLTRIKIPEILEDEWFKKGYKPASFTEEDGVNVDDVAAAFNESKENLVTETKEKPVSMNAFELISRSQSFNLENLFEKQKVVVKRETHFASQCPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFDKFYRTFSSGLQDIVWHSDQN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00841 437 CDD CIPK_C 314 427 - -
Tsu08g00841 437 Gene3D Phosphorylase Kinase; domain 1 9 97 - -
Tsu08g00841 437 Gene3D Transferase(Phosphotransferase) domain 1 98 297 - -
Tsu08g00841 437 Pfam Protein kinase domain 18 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00841 437 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Tsu08g00841 437 Gene3D Kinase associated domain 1, KA1 307 433 - -
Tsu08g00841 437 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Tsu08g00841 437 ProSiteProfiles Protein kinase domain profile. 18 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00841 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Tsu08g00841 437 Pfam NAF domain 310 370 IPR004041 GO:0007165
Tsu08g00841 437 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 12 434 - -
Tsu08g00841 437 SMART serkin_6 18 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00841 437 PANTHER - 12 434 - -
Tsu08g00841 437 SUPERFAMILY Protein kinase-like (PK-like) 14 281 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00841 Tsu-Chr8 9143431 9148527 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00841 6 435 CBL-interacting serine-threonine protein kinases AT1G01140 73.913 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu08g00841 Pkinase 2.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00841 - - gmx:100794136 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00841 08 9143431 9148527 Tsu08g00841 08 9143431 9148527 ECH
Tsu04g04276 04 50908220 50911947 Tsu08g00841 08 9143431 9148527 PCT
Tsu08g00840 08 9132853 9136776 Tsu08g00841 08 9143431 9148527 PCT