Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00837 ATGGGGAAGAAAGGAAGTAGTTCATGGTTAACTGCTGTCAAAAGAGCATTCAGATCTCCAACAAAAGATAGTGATAAAAGAAGTGCTAGAAGAAGAGAAGATTGtgatcaagaagaagatgaagaaaagaagagagaaaaaagaagatggATTTTTAGAAAACCAGTGAATCATGAAACAGTGAATAATACTCAACAAAGTACACCAACAAAGTTGAAGAATGATGTTGGTACTGTTACGAATGTTGTTTCAAGGACAGATCAAGATGAAAAACATGCTCTTGCTGTTGCTATGGCTACAGCTGAGGCAGCAAGAGCTACTGCTCAAGCTGCTGTTGAGGTTGCAAGGTTAACTAAGCCTTCAAATCATGCTAGGGAACATTATGCTGCTGTTGTGATTCAAACTTCTTTTAGAGGTTATTTGGCTAGAAGAGCGCTTCGAGCACTTAAAGGGTTGGTGAAGTTACAAGCTTTAGTGAGAGGCCACAATGTTAGAAAACAAGCAAAGATGACACTTAGGTGCATGCAAGCTCTTGTTAGAGTACAAGCAAGAGTTCTTGACCAACGGATAAGGTCTACTTCGAATGAAGGAAGTAGAAAATCAGCCTTTAGTGACACGGCAAGTGTTTGGGATTCGCGGTATCTTCAAGACATTTCAGATAGGAAATCAATATCAAGAGAAGGAAGTAGTGTTGCAGATGATTGGGACGATCGTCCACACACTGTTGAAGAAGTTAAGGCCATGTTGCAACAGAGGAAGGAAGCGGCTATGAAGAGGGAAAAGTCCCTGTCTCAAGCTTTTTCACAACAGATTTGGAGAAATGGTAGGACATCATCAATTGGAAATGAAGATGAACTTGAAGAGAGACCAAAATGGCTAGATAGATGGATGGCTACAAAACCATGGGAGAATAGAGGAAGAGCTTCAACTGATCAAAGAGATTCTATCAAGACCGTGGAAGTTGACACAGCTCAACCTTATTCATATCTCGGATCAAATTACAGAAGATCGCATCCAAATTATCAATATAATCCACACCACCAACCACAAAGACATTCCATTGCTTCACCACTCCATAGGACACACCAAAATGGATCCATTCACAACCAATCCATCACTACACCATCTCCATCGAAATCAAGACCTATCCAAGTCCGGTCGTCGAGCCCTCGTTGTGTTCGAGAAGATAGAAGCTACCACCACACTTCTCAAACACCTAGCTTAAGGTCTAATTATCATTACAATGgaaatttgtaccaaaatagTAGGGTAGGAACAAGTAGTAATGGTAGTAACGGCGCTGCTTCTGCTACATCTACATTGCCTAATTACATGCAAGCAACCGAGTCTGCGAAGGCTCGAATCCGGTCACAGAGTGCGCCGAGACAAAGGCCATCAACACCGGAGAGAGATAGATCCGGATCAGTAAAGAAAAGGCTTTCTTTTCCTGCTCCCGATCCTTATAATGTAGGAGGAGCCGCAGGTTATGGAAATTATGGACATAGTTTAAGAAGTCCAAGTTTCAAAAGTGTGAATGTAACATCACATTACGGGTTGGAGCAAAATTCGAATTACTCTTCTTGTTATACCGAGAGTCTTGGTGGCGAGGTTTCGCCTTCTTCAACCGGCGACCTTAGAAGGTGGTTGAGATGA 1653 0.4059 MGKKGSSSWLTAVKRAFRSPTKDSDKRSARRREDCDQEEDEEKKREKRRWIFRKPVNHETVNNTQQSTPTKLKNDVGTVTNVVSRTDQDEKHALAVAMATAEAARATAQAAVEVARLTKPSNHAREHYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSTSNEGSRKSAFSDTASVWDSRYLQDISDRKSISREGSSVADDWDDRPHTVEEVKAMLQQRKEAAMKREKSLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDSIKTVEVDTAQPYSYLGSNYRRSHPNYQYNPHHQPQRHSIASPLHRTHQNGSIHNQSITTPSPSKSRPIQVRSSSPRCVREDRSYHHTSQTPSLRSNYHYNGNLYQNSRVGTSSNGSNGAASATSTLPNYMQATESAKARIRSQSAPRQRPSTPERDRSGSVKKRLSFPAPDPYNVGGAAGYGNYGHSLRSPSFKSVNVTSHYGLEQNSNYSSCYTESLGGEVSPSSTGDLRRWLR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00837 550 Pfam IQ calmodulin-binding motif 153 169 IPR000048 GO:0005515
Tsu08g00837 550 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
Tsu08g00837 550 MobiDBLite consensus disorder prediction 528 550 - -
Tsu08g00837 550 Gene3D - 123 185 - -
Tsu08g00837 550 MobiDBLite consensus disorder prediction 403 464 - -
Tsu08g00837 550 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Tsu08g00837 550 Pfam Protein of unknown function (DUF4005) 389 495 IPR025064 -
Tsu08g00837 550 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 550 - -
Tsu08g00837 550 MobiDBLite consensus disorder prediction 327 489 - -
Tsu08g00837 550 PANTHER IQ-DOMAIN 5-RELATED 1 550 - -
Tsu08g00837 550 MobiDBLite consensus disorder prediction 327 387 - -
Tsu08g00837 550 MobiDBLite consensus disorder prediction 1 46 - -
Tsu08g00837 550 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
Tsu08g00837 550 SMART iq_5 148 169 IPR000048 GO:0005515
Tsu08g00837 550 SMART iq_5 125 147 IPR000048 GO:0005515
Tsu08g00837 550 MobiDBLite consensus disorder prediction 18 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00837 Tsu-Chr8 9094968 9098652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00837 1 550 IQD Protein Family AT1G01110 57.368 1.10e-179 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00837 - - gmx:100799284 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00837 08 9094968 9098652 Tsu08g00837 08 9094968 9098652 ECH