Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00833 ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTCAGGTTTCATCCAACTGAAGAAGAGTTACTTCAATATTATTTGAGGAAAAAAGTTTCTTATGAAAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGagAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGTCACAAAGACAAGAAGTATCCAACCGGAACGCGAACTAATCGAGCCACGGCTGCGGGTTTCTGGAAAGCCACTGGCCGTGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTCTATAAAGGTCGCGCACCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGACTAGACGATAATACCACCACGAACGACACCAATCTGgtgTCAAATGTGATTAGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGTCCTTTAGGCTCAGGAGAGGTAAGAAGAAACCAACACTTGTATGATGCTTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGGAGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAATTATGGAAGGTTTACAAGGCCTTTTGATCAAACTAGCATCAACAACAATGGTGGTTATAATAATGAAAGGTACATGAAACTTCCAAGCTTAGAGAGTCCAAAATCAACAAGCATGGACAACAATGACAACAACaatgatcatcatcatcataacaaTACTAATGAGTACCATGCACTTATTCAAGAAAATGAAGGGTCATTCACTGATCACCATAATAACATGGTTAATAATCCATTAGaggcatcatcatcatcaatgttGATAGCATCATGTGGTGGTGGTCTCACTAATTGGGTAGCTTTGGATAGACTTGTTGCTTCCCAATTGAATGGACAAACTGAGGCTTCTAGGCAATTGGCTTGCTTCAATGACCCCACAATGGGATATTGCACTAATGATCATGATCTTCAACTTCCTACCcttaaatcatcatcatcaacttcATCATTATCAACACACGTCCGGGCCGCTACTACTTCGACTACTACTACTGCTACAACTACCGCTAATACTTACATTAGTCCCTCACAAGATTATGGCAGTGAGATTGACCTTTGGAACTTCGCTCGATCAACTTCTTCCTTGTTGACATCTTCTGAACCACTATGCCACGTGTCGAATACGTCTGTGTGA 1320 0.3788 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTTNDTNLVSNVISDGGQEEGWVVCRIFKKKNHLKTLDSPLGSGEVRRNQHLYDACDEGALEQILQQMGRSCKEENYEANYNNYGRFTRPFDQTSINNNGGYNNERYMKLPSLESPKSTSMDNNDNNNDHHHHNNTNEYHALIQENEGSFTDHHNNMVNNPLEASSSSMLIASCGGGLTNWVALDRLVASQLNGQTEASRQLACFNDPTMGYCTNDHDLQLPTLKSSSSTSSLSTHVRAATTSTTTTATTTANTYISPSQDYGSEIDLWNFARSTSSLLTSSEPLCHVSNTSV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00833 439 MobiDBLite consensus disorder prediction 371 390 - -
Tsu08g00833 439 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Tsu08g00833 439 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Tsu08g00833 439 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Tsu08g00833 439 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 9 384 - -
Tsu08g00833 439 SUPERFAMILY NAC domain 9 176 IPR036093 GO:0003677|GO:0006355
Tsu08g00833 439 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 384 - -
Tsu08g00833 439 MobiDBLite consensus disorder prediction 258 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00833 Tsu-Chr8 8999386 9001219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00833 1 438 NAC Transcription Factor Family AT2G46770 52.242 1.79e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu08g00833 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00833 - - gmx:100793308 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00833 08 8999386 9001219 Tsu08g00833 08 8999386 9001219 ECH