Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00814 ATGGTGATTGACAGTGGAGATGAGTTTCTGGTGAGTTATTGGATGGCAGATGAGTTTCTGCAGCGCAAGAAAACCCTACTCGTCGAATTCGATCTCATTTCTTCAAGTGTGAAAATGTCTGTCGGAGAGGTTGCTTGCAGCTACTCACTCATGATCCTTCATGATGATAACATCGCCGTTACTGGTGACAAAATCTCAACTTTGTTGAAAGCTGCAAATGTTAATGTTGAAGCTTACTGGCCAAGCTTATTCGCTAAACTTGCCGAGAAGAAAAACCTTGATGATTTGATATTGAATGCTGCCGGAGGAGGAGCTCCTGCTTCTGTTTCAGCTCCAGTTGCTGCTGCTGCCACCACTGCAGTTGCTGCTCCAACCGAGGAAAAGAAGGAAGAACCCAAGGACGAGAGTGACGACGACATGGGATTCAGCTTGTTTGATTAA 441 0.4535 MVIDSGDEFLVSYWMADEFLQRKKTLLVEFDLISSSVKMSVGEVACSYSLMILHDDNIAVTGDKISTLLKAANVNVEAYWPSLFAKLAEKKNLDDLILNAAGGGAPASVSAPVAAAATTAVAAPTEEKKEEPKDESDDDMGFSLFD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00814 146 MobiDBLite consensus disorder prediction 120 146 - -
Tsu08g00814 146 Pfam 60s Acidic ribosomal protein 60 145 - -
Tsu08g00814 146 CDD Ribosomal_P1 43 145 - -
Tsu08g00814 146 MobiDBLite consensus disorder prediction 124 140 - -
Tsu08g00814 146 Hamap 50S ribosomal protein L12 [rpl12]. 44 146 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tsu08g00814 146 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 39 137 - -
Tsu08g00814 146 Gene3D - 39 100 IPR038716 -
Tsu08g00814 146 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 39 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00814 Tsu-Chr8 8781444 8784115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00814 39 146 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 56.637 1.34e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00814 K02942 - sind:105160280 124.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00814 08 8781444 8784115 Tsu08g00814 08 8781444 8784115 ECH
Tsu02g00430 02 3596630 3598445 Tsu08g00814 08 8781444 8784115 ECH