Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00810 ATGGATGAAGAAATTGAATTAATCAGAAAAATGAATGAAACAGAGgtgaaagaagagaagaagaacaaTCATGATGATGATACTAATGATCAATCTAAAGAGGTTTTTAGATGGGAAATGCTTCTACCAAAGATTAATGTTACTGTTTTACTTGTTGAATCTGATCGTTCTACTCGAAGATTAATTACTGCTCTTCTTAAGAATTGCAGTTATAAAGTTATTGCGGTTTCTAATGGATTAAAGGCATGGGAGACATTGAAGATGAAGGCAACTGACATCGATCTCATATTAACAGAAATGGAGTTGCCTACAATGTCTGGATTAGAACTCCTTTCTAAAATTATGGAGCATGAAATTTGCAAAAACATTCCCGTTATAATGATGTCTTCTCACGATTCACGTATCACGGCAATGAATTGCATGTTTAAAGGTGCAGCTGATTTTCTTATCAAACCTGTTCGGAAGAACGAGCTTACGAACTTATGGCAGCATGTATGGAGAAAGCATGTTATTAACAGGCCTCTTCAAAATTCAACATCTGTATTAAAGAATCTTAAAATTGCCACAGAAGACAATTTTGCTGGCAATCAATCAACTGATTCTGTTTCTGTGGCTTCCTCTcagaaaaatgataaatgcaGTGAGAAATTGAGCGAAGCTCAAAGCGCACATGCACTGCCATTTTCTGATGCTGAGAATGCACACATGGGTAATATGGAAAATGCCTCTCTGATGAAGTGTTCTTTGAAATTAAGCAACATTGATGTGTTGAAGCATGAAGAGTCTAACACAATTGTACCGGGATCTACTAAGCATAATGATGAAACAGGAGATTCAAGGCTAGAACAAGATTCTGGTACTGCTGAAATTGAACCCAAAAATCAAATACTTAGAGCTGAGTTAAGCAGAGAGAACCCTGATATTGATACCAAGATACATGGATGCAGTGATGAACTGATAGAACCTTCTAAGAGTGCTATTGACTTGATTTCCACATTTGGGAAATCAAACAAGCAAGCAAGTGAATTTTCTGGCAGCTCATGCAAACAAGCAAGTGAAGCATCTGAGGAATGGCAAAGATTGAACCACTCAAATACTTCTGCCTTTTCCCGGTATGATGGTAGTAAGATGTTGCGGCCACTTTTTCAAAACACCAATTGGAATTCTAATAAATCTCATGAATTATCTGTAGTAACTGCTGGTAATTGTTTTCAGTATGGTGCCTTAATTAAAACGGAGAATTTGACTACTGCAGTAATGGCTCAGTATGGACAACTTGGACCAAAATTATTTAATACTGGACTCTTAGCTGATAATGTTTTCCATCACACATGGACTTCTAAACCAAATTGCCAAAGAGAGAGCTCTCCCTTTCCCTCAAGCTCTTCCTCTCAGTCCAATCCCGAAAGTCACAATTCAGACCATCATCACAATTGCTCTTATGATGTTAACTACAATTTTCGTAATCAAGATGCTGCTGAAAAGATTGATTTGGATCATGTAGTGCATGATTCCCCTACAGCTGGTCAGGGTTTTGGCAATGAATTATGTCATGCTTCAAATCATATTAATGGTAGTGGCGATGTTGGAAGGGCTGCTTCAAATGCAGTTACTAAGAATGCTTCAAATCATATTAATGATAGTGGCAATGTTGGAAGGGCTGCTTCAAATGCGGTTACTATGAACTCAAGAAGTTCTAGTGATGGCAGATGCTACAAACAtgattattatgattatgaCGATGAATTTAGATCGAGTGATTCTCAAAGATCCAGTCAAAGAGAAGCAGCTCTAACAAGGTTCCGATTAAAACGAAAAGAGAGATGCTTCGGGAAAAAGGTTCGATATGAGAGCCGGAAAAAACTGGCAGAGCAACGCCTTAGGGTGAATGGGCAGTTCGTACGAAAAGTACACAATGATGATCATCCAAACGCAGATGCTAGTGGTGGTGATCAATGA 1959 0.3716 MDEEIELIRKMNETEVKEEKKNNHDDDTNDQSKEVFRWEMLLPKINVTVLLVESDRSTRRLITALLKNCSYKVIAVSNGLKAWETLKMKATDIDLILTEMELPTMSGLELLSKIMEHEICKNIPVIMMSSHDSRITAMNCMFKGAADFLIKPVRKNELTNLWQHVWRKHVINRPLQNSTSVLKNLKIATEDNFAGNQSTDSVSVASSQKNDKCSEKLSEAQSAHALPFSDAENAHMGNMENASLMKCSLKLSNIDVLKHEESNTIVPGSTKHNDETGDSRLEQDSGTAEIEPKNQILRAELSRENPDIDTKIHGCSDELIEPSKSAIDLISTFGKSNKQASEFSGSSCKQASEASEEWQRLNHSNTSAFSRYDGSKMLRPLFQNTNWNSNKSHELSVVTAGNCFQYGALIKTENLTTAVMAQYGQLGPKLFNTGLLADNVFHHTWTSKPNCQRESSPFPSSSSSQSNPESHNSDHHHNCSYDVNYNFRNQDAAEKIDLDHVVHDSPTAGQGFGNELCHASNHINGSGDVGRAASNAVTKNASNHINDSGNVGRAASNAVTMNSRSSSDGRCYKHDYYDYDDEFRSSDSQRSSQREAALTRFRLKRKERCFGKKVRYESRKKLAEQRLRVNGQFVRKVHNDDHPNADASGGDQ 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00810 652 Pfam Response regulator receiver domain 49 160 IPR001789 GO:0000160
Tsu08g00810 652 SUPERFAMILY CheY-like 47 182 IPR011006 -
Tsu08g00810 652 SMART REC_2 47 162 IPR001789 GO:0000160
Tsu08g00810 652 PANTHER TWO-COMPONENT RESPONSE REGULATOR 531 647 IPR045279 GO:0009736
Tsu08g00810 652 PANTHER PRR RESPONSE REGULATOR 531 647 - -
Tsu08g00810 652 PANTHER PRR RESPONSE REGULATOR 28 246 - -
Tsu08g00810 652 MobiDBLite consensus disorder prediction 448 478 - -
Tsu08g00810 652 ProSiteProfiles CCT domain profile. 594 636 IPR010402 GO:0005515
Tsu08g00810 652 Gene3D - 47 272 - -
Tsu08g00810 652 Pfam CCT motif 594 636 IPR010402 GO:0005515
Tsu08g00810 652 MobiDBLite consensus disorder prediction 448 469 - -
Tsu08g00810 652 ProSiteProfiles Response regulatory domain profile. 48 166 IPR001789 GO:0000160
Tsu08g00810 652 PANTHER PRR RESPONSE REGULATOR 253 342 - -
Tsu08g00810 652 PANTHER PRR RESPONSE REGULATOR 341 541 - -
Tsu08g00810 652 PANTHER TWO-COMPONENT RESPONSE REGULATOR 253 342 IPR045279 GO:0009736
Tsu08g00810 652 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 246 IPR045279 GO:0009736
Tsu08g00810 652 PANTHER TWO-COMPONENT RESPONSE REGULATOR 341 541 IPR045279 GO:0009736
Tsu08g00810 652 MobiDBLite consensus disorder prediction 273 287 - -
Tsu08g00810 652 MobiDBLite consensus disorder prediction 262 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00810 Tsu-Chr8 8730346 8735577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00810 589 643 Response Regulator Gene Family AT5G24470 70.909 3.55e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Tsu08g00810 Response_reg 2.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00810 K12130 - gmx:100791698 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00810 08 8730346 8735577 Tsu08g00810 08 8730346 8735577 ECH
Tsu08g00810 08 8730346 8735577 Tsu07g04733 07 51642655 51647413 ECH
Tsu08g00810 08 8730346 8735577 Tsu08g00810 08 8730346 8735577 PCT