Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00809 ATGATCTTTCTCAGTTATTCTCTTGGGTCCATTACACCTGAAATACTGCAAATGCATCAAGAAGATGATCCAACTCCTCCACACCATTCACAGCGACAAGATCCAACTCCACGCCATTCACAACGTTATTTCCCTATCAAAAtgacaccaccaccaccaccacaacaacatcaacaaaatcatcaatatCCCATGGAACACAAAGGTAATATGATTCCTCGTTATAGAGTACCAAATGCTCCAAAACGCGAAcattgcatatgcatcacaatCTTTTTCCTCTTACTTGGAATCATAATCTTAATCTTATGGCTTGCATACCATCCTTCAAAACCTCACATCACAGTCACAAGTGCTGCAATCTATGGCCTCAATGCAACTTCACCACCATTCATGTCAATCTCAATGCAATTCACAATCTTCATAAGGAATCCAAACAAGCGTGTCTCTATTTACTTTGATAGGCTTTCTGCCTTTGTGTCATATAGAAACCACCCGATTACGCCACATGTTGTGCTTCCGTCGTTTTTCTTGGAGAAGCACGGAACAGTTTCGTTGTCGCCGGAGTTAGGAGGCGTGCCGGTTCCGGTTTCGGTGGAAGTGTTGAATGGTTTGATGGTGGATGAGAATTATGGTGTGGTGGGTGTGAAACTTATATTTCAAGGTAGGTTGAAGTGGAAAAGTGGTGAGATAAAATCTGCTCATTATGGTTTGTATGCTAAGTGTGATTTATTGTTGGGTTTGAAGAAAGGTATTGTGGGTCAGATTCCTCTGATTGGTGCTCCAGTTTGTGAGAATCTGAAGCGTGGGAGTGGAAAGAGAGATCGCACTACATTCAAAATGGATGCGCACAGCTCTCACCACGGCCAAATAATTGAAATCGGTGGAGATCTTCCTGAAGGAAGGAAGATTTGCGGCGAAGCACCATGTGGATTCTCAGATGCTGGATCTATCTCTCTGGATTCTAAGGAACGTTCGACCTCTATGCGAAAGCTTTTGGTGGCTGTGATCCTTTGTGTTATTTTCATGACCGTTGAATTAGTCGGTGGCATCAAAGCAAACAGTCTTGCAATATTGACCGACGCGGCACATTTGCTTTCCGATGTTGCAGCATTTGCTATCTCCTTGTTTTCTTTATGGGCTGCGGGATGGGAAGCTACTCCCCGTCAGTCGTACGGATTTTACAGAATAGAGATTCTTGGTGCTTTGGTTTCTATTCAATTAATATGGCTGCTCACGGGGATTATTGTATATCAAGCCATTGATAGACTTGTTACCGGTTCTCAAGATGTCAATGGTTTTCTGATGTTTCTAGTTGCTGCATTTGGTCTCGTGGTTAACATCATTATGGCTGTGTTATTAGGTCATGATCATGGTCATGGTCATGGTCATGGCCATGGTCATGGTCATGGTCATGGCCATGGCCATGACCACGGACACGGACATCATGGCCATAGCCACGGACTTACAGTTTCTACTCATGATCTTACAAAAGATGAGCACCACCATCATACTCATGATCATGGCCACAGCACTCACCATCATGATGAAAACCACTCAAAAGATGCTCATCATCATTCTCATGAAGACCATCACAGCCACGAAGGTGTTACCGAACCACTTCTTGGTGAATCAAAAGACAAGTCAAAGAAGAAACGCAACATAAATGTGCAAGGCGCTTACCTCCATGTACTCGGCGACTCTATCCAAAGTGTTGGAGTAATGATTGGTGGAGCAGTCATATGGTATAAACCTGAATGGAAAATAGTTGATTTAATTTGCACTCTTTTCTTTTCGTTAATCGTTTTGGGAACAACTATCAATATGCTGCGAAACATTTTGGAAGTTCTGATGGAAAGCACACCTCGCGAAATCGATGCTACTCAGCTTGAAAGGGGGATATTGGAAATGGAAGAAGTAGTAGCTGTTCATGAGCTGCACATTTGGGCCATTACAGTTGGAAAGGTTTTGCTAGCATGTCATGTTAAAATCAACCGCGATGCCGATGCTGACATGGTATTGGACAAAGTTGTGGACTACATCAGAAGGGTTTATAACATAAGTCATGTAACTATACAGATCGAACgttag 2091 0.4146 MIFLSYSLGSITPEILQMHQEDDPTPPHHSQRQDPTPRHSQRYFPIKMTPPPPPQQHQQNHQYPMEHKGNMIPRYRVPNAPKREHCICITIFFLLLGIIILILWLAYHPSKPHITVTSAAIYGLNATSPPFMSISMQFTIFIRNPNKRVSIYFDRLSAFVSYRNHPITPHVVLPSFFLEKHGTVSLSPELGGVPVPVSVEVLNGLMVDENYGVVGVKLIFQGRLKWKSGEIKSAHYGLYAKCDLLLGLKKGIVGQIPLIGAPVCENLKRGSGKRDRTTFKMDAHSSHHGQIIEIGGDLPEGRKICGEAPCGFSDAGSISLDSKERSTSMRKLLVAVILCVIFMTVELVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFYRIEILGALVSIQLIWLLTGIIVYQAIDRLVTGSQDVNGFLMFLVAAFGLVVNIIMAVLLGHDHGHGHGHGHGHGHGHGHGHDHGHGHHGHSHGLTVSTHDLTKDEHHHHTHDHGHSTHHHDENHSKDAHHHSHEDHHSHEGVTEPLLGESKDKSKKKRNINVQGAYLHVLGDSIQSVGVMIGGAVIWYKPEWKIVDLICTLFFSLIVLGTTINMLRNILEVLMESTPREIDATQLERGILEMEEVVAVHELHIWAITVGKVLLACHVKINRDADADMVLDKVVDYIRRVYNISHVTIQIER 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00809 696 SUPERFAMILY Cation efflux protein transmembrane domain-like 326 619 IPR027469 -
Tsu08g00809 696 TIGRFAM CDF: cation diffusion facilitator family transporter 329 696 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Tsu08g00809 696 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 624 695 IPR036837 -
Tsu08g00809 696 MobiDBLite consensus disorder prediction 488 550 - -
Tsu08g00809 696 MobiDBLite consensus disorder prediction 21 36 - -
Tsu08g00809 696 MobiDBLite consensus disorder prediction 19 62 - -
Tsu08g00809 696 MobiDBLite consensus disorder prediction 461 487 - -
Tsu08g00809 696 PANTHER METAL TOLERANCE PROTEIN A1 281 696 - -
Tsu08g00809 696 Gene3D Cation efflux protein transmembrane domain 328 617 IPR027469 -
Tsu08g00809 696 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 281 696 - -
Tsu08g00809 696 Pfam Cation efflux family 332 618 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Tsu08g00809 696 MobiDBLite consensus disorder prediction 460 550 - -
Tsu08g00809 696 Pfam Late embryogenesis abundant protein 141 228 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00809 Tsu-Chr8 8721231 8729491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00809 281 696 Inorganic Solute Cotransporters AT2G46800 69.249 2.91e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00809 K14689 - gmx:100794876 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00809 08 8721231 8729491 Tsu08g00809 08 8721231 8729491 ECH
Tsu08g00809 08 8721231 8729491 Tsu07g04734 07 51648051 51649125 ECH
Tsu08g00809 08 8721231 8729491 Tsu08g00809 08 8721231 8729491 PCT