Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00808 ATGTCAAGTTTAGAAGATAACATACCATTTCTTCAAATGCTTCAAAATGTTGAAACACCACAATTTTTTCCATTGAAAGAACCAAACTTTCAAACACTTTTAAGGTTACAACATATGAAAAAACCATGGGAAGATTTATCTTTTGTTCCTAGAATAGATTCACAACAAGTTCAAACAACATTGGAATTTGAAAGTTGTGTAACACAAGACATATTAGAGATGCAATCACCAGTTAAATCAGAAAGCAATGAACTTCTTCAACATAAAGTTTCTTCTTCATGCATTGAGAAATTAAGCTATGAATGTAaccaagaacaaagaaaaatagtacAATCTTGTTCTAAATCTCAACTTGGAACAACTAAggaaaagagaaagagaaaaagaacaaGACCAGTTAAGAATAAGGAAGATGTTGAGAGTCAAAGAATGACACACATTGCTGTTGAAAGAAATAGGAGACGCCAAATGAATGACCATCTCAGTGTTCTTAGGTCACTTATGCCTTCTTCATATATTCAAAGGGGAGACCAAGCATCAATTATTGGAGGAGCAATAGATTTTGTGAAAGAGTTAGAACAATTGCTTGAATCTCTTGAAGCacaaaaaaggataaaaaagaatgaagaatttggttcttcatcatcatcatcaccaactAATTATGGAATGAAATTATCATCTTGTGAAGAAAATGAGGTAAAGGCAGAAAATAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACTCATGTGAACTTGAAAATTGAGTGCAAAAAAAGACATGGCCAATTGATAAAGGTTATTGTTGCTTTAGAGAATCTTAGGCTATCTATTCTTCACCTTAACATCACATCCTTTGATTCTTCTGTACTCTACTCCCTCAATCTCAAGATTGAAGAAGATTGTAAGCTAGGCACAGCAAATGACATAGCTGAAGCAGTTCATCAAATATTTAGCTACATTAATTAA 978 0.2914 MSSLEDNIPFLQMLQNVETPQFFPLKEPNFQTLLRLQHMKKPWEDLSFVPRIDSQQVQTTLEFESCVTQDILEMQSPVKSESNELLQHKVSSSCIEKLSYECNQEQRKIVQSCSKSQLGTTKEKRKRKRTRPVKNKEDVESQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYIQRGDQASIIGGAIDFVKELEQLLESLEAQKRIKKNEEFGSSSSSSPTNYGMKLSSCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKRHGQLIKVIVALENLRLSILHLNITSFDSSVLYSLNLKIEEDCKLGTANDIAEAVHQIFSYIN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00808 325 PANTHER TRANSCRIPTION FACTOR BHLH70 4 325 - -
Tsu08g00808 325 PANTHER MAX DIMERIZATION, MAD 4 325 - -
Tsu08g00808 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 209 IPR036638 GO:0046983
Tsu08g00808 325 Gene3D - 132 209 IPR036638 GO:0046983
Tsu08g00808 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 192 IPR011598 GO:0046983
Tsu08g00808 325 SMART finulus 147 198 IPR011598 GO:0046983
Tsu08g00808 325 Coils Coil 189 209 - -
Tsu08g00808 325 MobiDBLite consensus disorder prediction 114 143 - -
Tsu08g00808 325 Pfam Helix-loop-helix DNA-binding domain 142 193 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00808 Tsu-Chr8 8703343 8706065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00808 2 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.012 1.79e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g00808 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00808 - - gmx:100789928 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00808 08 8703343 8706065 Tsu08g00808 08 8703343 8706065 ECH