Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00792 ATGTCTCCTTCACAAGAAACCATTGAAGGTGAAGCATCTCACCTTACACAAGGAGATGTCCAAAATGAAGATGGCATAGTTTTTGCTTTAAACTTGATTTCTTCGATCATGCTTCCATTGACCGTTCGGTCCGCAGTTGAGCTTGGCATCTTCGACATCTTAGCCAAAGAAGGAAAAGACGCCAAACTCTCTGCAGATGATATTGCAGTTAAGATTGGATCAAATAATCCAGAAGCACCCACAATGTTGAACCGTCTTTTAATGTTATTGGCTAGTCACTCCATGTTATATTGCTCGCTTTCTGAAGATCAACAAGGGCATACATCTCCTCAAAGACTCTATAGCCTCACCCCCGTCTCTAAGTATTTTGTGACGGATGCTGATGGTGTATCGTTTGGACCAACATTAAACTTACCTTTGGACAAAGTTTTCTTGGGAAGctgGACCGAAATGAAAGGAGCAATTATGGAAGGAGGTATACCATTCAATAGGGTTTATGGTATGCATGCATTTGAATACCCAGTGGTTGATCCAAGATTTAATGATGTTTTCAACAATGCTATGGTCAATACAACCACTATTGTGATGAAGAGGATTCTTGAGATCTATGAGGGTTTTAAGAACATCAATAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAATATCAAATTAATTACTTCTAAATATCCTCATATACATGGTGTTAATTTTGACTTGCCACACGTCCTAGAACATGCACCTACCTATCCCGGTGTGACACATGTGGGAGGAGATATGTTTGAAAGTGTTCCGGATGGAgatgttatttttttgaagTGGATACTTCACGATTGGAGTGATGAACATTGCTTGAAGTTATTAAAGAATTGTCATAAAGCTATTCCAAATGATGGAAAAGTGATTGTTGTAGATTCAATTATACCTATTTTGCCTGAGAGTACAATGGTAGCTAAAACTGGTTTCCAAGCTGATCTCATGATGATGGCTCAAAATCCAGGAGGCAAAGAGAGAACAAAAGATGAGTTCATGGAATTAGCATTAGGATCTGGATTTAGTGACATTAATTTTGCTTGCTATTTTTCTGGCTTTTGGGTTATGGAATTTATTAAGTAG 1116 0.3817 MSPSQETIEGEASHLTQGDVQNEDGIVFALNLISSIMLPLTVRSAVELGIFDILAKEGKDAKLSADDIAVKIGSNNPEAPTMLNRLLMLLASHSMLYCSLSEDQQGHTSPQRLYSLTPVSKYFVTDADGVSFGPTLNLPLDKVFLGSWTEMKGAIMEGGIPFNRVYGMHAFEYPVVDPRFNDVFNNAMVNTTTIVMKRILEIYEGFKNINRLVDVGGGLGINIKLITSKYPHIHGVNFDLPHVLEHAPTYPGVTHVGGDMFESVPDGDVIFLKWILHDWSDEHCLKLLKNCHKAIPNDGKVIVVDSIIPILPESTMVAKTGFQADLMMMAQNPGGKERTKDEFMELALGSGFSDINFACYFSGFWVMEFIK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00792 371 PANTHER O-METHYLTRANSFERASE 1 371 IPR016461 GO:0008168
Tsu08g00792 371 PIRSF O-mtase 8 371 IPR016461 GO:0008168
Tsu08g00792 371 Pfam Dimerisation domain 41 91 IPR012967 GO:0046983
Tsu08g00792 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Tsu08g00792 371 Gene3D - 9 123 IPR036388 -
Tsu08g00792 371 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 371 - -
Tsu08g00792 371 SUPERFAMILY "Winged helix" DNA-binding domain 22 126 IPR036390 -
Tsu08g00792 371 Gene3D Vaccinia Virus protein VP39 124 371 IPR029063 -
Tsu08g00792 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 371 IPR016461 GO:0008168
Tsu08g00792 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00792 Tsu-Chr8 8454047 8456378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00792 13 371 Monolignol Biosynthesis Gene Families AT5G54160 50.829 1.55e-133 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00792 K13066 - gmx:100789402 568.54