Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00784 ATGGAGTTGATGCAAGAAGTGAAAGATTATTCACATGAAGAAttagaggaagaagaagatgaagaaatcaacacaagaacaacaaaagaagaagaagaaagtaataGTAAGCAACAATTACAACACTGCCCTTTTTCTCCTTCACCTTCTAATTTCTctttatcttcatcttctccttcaACAACTCATCATCAcaatcataatcaaaatcaatggcTAGGAATCAATCATTCTCCTGAGTCTCATAATTCATCATCTAGAGGATTAGGGTTCTTACACCAAGATACAACAACCTCAAATTtcacaaatcaaacaaatttaaaacaaatagaTTTCATGGAATTGTCTCTTGGTACAAACAAAGATCCTAGTTCTTCAAATACCAACAACAATAACCAACAACAAGACCAACAagaacatcaacaacaacaacaacctagTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGAAAACTAAACCGTTTAGTTATACCAAAACAACATGCTGAAAAATATTTTCCACTTGATTCAAACTCAAATGAAAAAGGTCTACTTCTAAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGTCAAAGCTATGTTATGACAAAAGGTTGGAGTCGTTTTGTTAAGGATAAAAAACTGGATGCCGGTGACATTGTTTCGTTTCAACGCGGTGTTGGCGAATTGTTTCGACATAGGTTGTTTATTGATTGGAGGAGAAGAACAAATCATAATCTTGATCCTTCTTCATCAACACTTTTTACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGGGGAGGTGCTAATAGTAGATTCTATTCTCTTCCTTATCCTTCACCCCCACAAAGtttacaacaacatcatcatcatcagcaacaaaatcatcatcaaaatcatcatgaCCCTATGAGTTACAATTATCAAATGTATCCATTTCATCAACATGGTGGTGGAAATGTTGGAAATGTGAATCATCAATACAattttcatcatcaacaacatgaTCCAAGTTCTGTCTTTTACATGAGATCATCAGCATCATCATCAATGGTTGATCAAGGAAGCTTAACAAGACATCAACAAGGAGGAGTAGGAGGTGGAGTTGGAAGAGGAAATGCTTCAAACATGATTATTGATTCTGTTCCTgtttctcatcatcatcaacattatcatcatcaacatcaacatgGTGGTTTTTCTAGTAGTGGAAATTTAActagtactactactactactactagtaaTGCTATTAATGGTGCTGGAAAAAGGTTAAGATTGTTTGGTGTGAACATGGAGTGTGGTTCTTCAACAAATCATGATTCAattccttcttcttcaacttcaatAGTACCATCTCTTCAACATTTGAGGCTACCTCATCATGAAGAAACATCAACAAGATTTGAAGAAGATAAAAGAAGAGAAGCTTCAATGATTTTTGGTTTAGACCCTTCTTTGCAATATCATAATTATCAACAACAATga 1554 0.2741 MELMQEVKDYSHEELEEEEDEEINTRTTKEEEESNSKQQLQHCPFSPSPSNFSLSSSSPSTTHHHNHNQNQWLGINHSPESHNSSSRGLGFLHQDTTTSNFTNQTNLKQIDFMELSLGTNKDPSSSNTNNNNQQQDQQEHQQQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSNSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGVGELFRHRLFIDWRRRTNHNLDPSSSTLFTPFFLPNQQQYSIRWGGGANSRFYSLPYPSPPQSLQQHHHHQQQNHHQNHHDPMSYNYQMYPFHQHGGGNVGNVNHQYNFHHQQHDPSSVFYMRSSASSSMVDQGSLTRHQQGGVGGGVGRGNASNMIIDSVPVSHHHQHYHHQHQHGGFSSSGNLTSTTTTTTSNAINGAGKRLRLFGVNMECGSSTNHDSIPSSSTSIVPSLQHLRLPHHEETSTRFEEDKRREASMIFGLDPSLQYHNYQQQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00784 517 SMART B3_2 155 260 IPR003340 GO:0003677
Tsu08g00784 517 Pfam B3 DNA binding domain 155 259 IPR003340 GO:0003677
Tsu08g00784 517 MobiDBLite consensus disorder prediction 145 159 - -
Tsu08g00784 517 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 104 482 IPR044800 GO:0003700
Tsu08g00784 517 MobiDBLite consensus disorder prediction 117 144 - -
Tsu08g00784 517 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 104 482 - -
Tsu08g00784 517 MobiDBLite consensus disorder prediction 117 159 - -
Tsu08g00784 517 CDD B3_DNA 153 242 IPR003340 GO:0003677
Tsu08g00784 517 MobiDBLite consensus disorder prediction 38 105 - -
Tsu08g00784 517 MobiDBLite consensus disorder prediction 12 26 - -
Tsu08g00784 517 SUPERFAMILY DNA-binding pseudobarrel domain 151 256 IPR015300 -
Tsu08g00784 517 Coils Coil 12 35 - -
Tsu08g00784 517 MobiDBLite consensus disorder prediction 1 105 - -
Tsu08g00784 517 MobiDBLite consensus disorder prediction 299 325 - -
Tsu08g00784 517 ProSiteProfiles B3 DNA-binding domain profile. 155 260 IPR003340 GO:0003677
Tsu08g00784 517 Gene3D - 148 267 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00784 Tsu-Chr8 8376232 8378511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00784 126 459 RAV Transcription Factor Family AT2G46870 44.478 1.85e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu08g00784 B3 1.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00784 - - mtr:MTR_8g023990 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00784 08 8376232 8378511 Tsu08g00784 08 8376232 8378511 ECH
Tsu08g00784 08 8376232 8378511 Tsu08g00784 08 8376232 8378511 PCT