Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00783 ATGAACAAAACAAGTTTAAGGTATAGTAGAAAAACCAAATATGGCTCTTGGAAGAAAACGGGTAAAGATCGTAAAATTAAGGCAAAAGGAAGAAACACTATTATAGGCCTTAAAAGGACTCTGGTTTTCAACAAACATGATCATGAAAAGACCAAGTGGACTATTCATGAGTACCATGCAAATGAAGCAATTTTTCCTCATAACAAgACAAATTTGGTGTTGTGTCGGTTGAAGAAAGATGAACAGGTAACTCATTCAAGTAGCAACGAATCCGCCGCCGACTTTGAAAAACAACCGCTGATGGATTATATAGCTCAAGATAATAAAACACTTCATGATTCCTTGGTTGGATATGGGTTCCACCCCACGGAAGAAGAGTTATTGTGTTATTACTTAAAACACAAGTTGGCCGGTAATGATTCCATGGTTAGCAACATTTCTGAAGTTAACCTTACAAACTTTGAACCTTGGGAATTACCAGCATTGTCCAAGATAACATCGAATGATTCAGAATGGTATTTTTTTACCACTGATGTTTTGAAGTACAAGAAAAGCACAAAGTGTGAAAGGACTACCAATGCTGGTTATTGGAAGAATACTGGCAAAACCCGTGAAATCAAGATCAAAGGAACCAACAACGTTATTGgcacaaaaatgttttttgttttctacaaaCATTGTGGTTCTCATGTTGAAAAGACTGATTGGGTTATCCACCAGTATCATGCAATTAACGTTTCTGATGACAAGagaaattttgttttgtgtcGATTGAAGGAGAAAACTGGAGTAGTAAGTGATGAATTGATGTATGATGAAGGGACAAGTAGCCATGTTGCTACCGGCGTTGACTTAGAAAGCATAGCAACACCGGATTTAACTCCAAATGTATGTGGTTCCCCTGAAGTGAATATGGTTTATAACTTACTAGCATCCCCTCAAGAAGATAATTATAGCTTCCCTGCATATAGTTTCCCAGCAGCTACTGATCAGACACCATATTTTGAAGGTTTAACATCTTCAATTTCAAATGCATATTTTGAGACTGAAAACAGCAATGCAGGGTTTCCATTTGAAACTGATCAAGAGGGTAATTCGGATTATATTTCATTCTTCAATTCAGATTTAGCATCTGGTGATGTTTATATTAGTTAA 1155 0.3532 MNKTSLRYSRKTKYGSWKKTGKDRKIKAKGRNTIIGLKRTLVFNKHDHEKTKWTIHEYHANEAIFPHNKTNLVLCRLKKDEQVTHSSSNESAADFEKQPLMDYIAQDNKTLHDSLVGYGFHPTEEELLCYYLKHKLAGNDSMVSNISEVNLTNFEPWELPALSKITSNDSEWYFFTTDVLKYKKSTKCERTTNAGYWKNTGKTREIKIKGTNNVIGTKMFFVFYKHCGSHVEKTDWVIHQYHAINVSDDKRNFVLCRLKEKTGVVSDELMYDEGTSSHVATGVDLESIATPDLTPNVCGSPEVNMVYNLLASPQEDNYSFPAYSFPAATDQTPYFEGLTSSISNAYFETENSNAGFPFETDQEGNSDYISFFNSDLASGDVYIS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00783 384 SUPERFAMILY NAC domain 111 260 IPR036093 GO:0003677|GO:0006355
Tsu08g00783 384 PANTHER FACTOR, PUTATIVE-RELATED 116 283 - -
Tsu08g00783 384 PANTHER FACTOR, PUTATIVE-RELATED 2 82 - -
Tsu08g00783 384 Pfam No apical meristem (NAM) protein 4 59 IPR003441 GO:0003677|GO:0006355
Tsu08g00783 384 Pfam No apical meristem (NAM) protein 116 242 IPR003441 GO:0003677|GO:0006355
Tsu08g00783 384 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 116 283 - -
Tsu08g00783 384 ProSiteProfiles NAC domain profile. 1 80 IPR003441 GO:0003677|GO:0006355
Tsu08g00783 384 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g00783 384 ProSiteProfiles NAC domain profile. 114 261 IPR003441 GO:0003677|GO:0006355
Tsu08g00783 384 SUPERFAMILY NAC domain 4 79 IPR036093 GO:0003677|GO:0006355
Tsu08g00783 384 Gene3D NAC domain 123 264 IPR036093 GO:0003677|GO:0006355
Tsu08g00783 384 Gene3D NAC domain 1 84 IPR036093 GO:0003677|GO:0006355
Tsu08g00783 384 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00783 Tsu-Chr8 8338106 8343654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00783 4 89 NAC Transcription Factor Family AT3G15170 37.234 1.79e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu08g00783 NAM 4.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00783 - - mtr:MTR_8g023900 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00783 08 8338106 8343654 Tsu08g00783 08 8338106 8343654 ECH