Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00782 ATGACAACTTCACACCCCATCGTTGATTCTCTACCCGTTGGATTCAGATTCAGACCAACAGATGAAGAGCTAGTTAACCATTATCTCAAAAACAAGTTACTTGGTAATGATTACATTGTAAACAATGTTATAGCTGAAGTTGATGTTTGCAAGTTTGAACCTTGGGAGTTACCAGATGTTTCAGTGATAAAATCTGATGACCCAGAATGGTTTTTCTTGTGTCCTTGTGATTACAAGTATGCTAAAAGTAGAAGGTTTAACAGGGCAACAAAGCGTGGATTTTGGAAAACTACTGGAAATGACCGTAAGATTAAGATTAGGGGTACTGATAAGGTTATTGGGATTAAGAAAACTCTTGTTTACTATAATGGTCGAATTCCTGGTGTTAAGAGCAGCAACTGGGTCATTCATGAGTATCATGATGTTACCTTGGAAGAAAACAAGAGAACTTTTGTTTTAAGTCGCTTGATAAGGAAAGCTGAGAAAAAAGCTGAAGAGGGAGCTGAGACAAAAGCCGAAGAGGAAGCTGATATAATGATATGCGATGAAGGGGAGCCAAGTAGACACATGACAATGACAACTTCATACCCCATTGTTGATTCTCTTCCTGTTGGATTCAGATTCAGACCAACAGATGAAGAACTAGTTAACCACTATCTCAAAAACAAGTTACTTGGTAATGATTCCAGTGTCATAGCTGAAGTTGATTTTTGTAAGTTTGAGCCTTGGGAATTGCCAGCTATTTCAATGATAAAATCCCATGACCCAGAATGGTTTTTCTTGTGTCCTCGTGATTACAAGTATGCAAAGAGTAAAAAGATTAACCGGGCAACAAAGTGTGGTTTTTGGAAACCTACCGGAAAAGATCGTAACATTAAGATTAGGGGTACTAATAATGTTATTGGGACTAAGAAGACTCTTGTTTACTACAAAGGTCGTGCTCCTCATGATGTTAAGACCAATTGGGTTATGCATGAATATGATAATGTTACCTTTGAAGATAACCAGTTTCATTTCAGCAAAGCTTCTTTTCGATCCAACTTCAATTCAGAATCGTTCAATTTCTATTCACTTCAACTATCATTCAGAATCGTTCgttcaatttcaattcaattcaacttCGATTCAGTTTCAGACTCTCTCAAGCTTCAATTCAGTTTTGTTCATCCTTCAATCCAGCCTACAATCCAAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCACGGGATCGCAATCCTTTGTCCCGTCCATTGTAGCACTTATGTCGTCCAAGGCAGTAAGGGGAATGATTTGATGTCATCCTCACTTTCCTCCGGCTTATCACCGGTAGTCTGTTCAGGGTTCTGCCTAACCAGCCAAAACTTTACAAAGCTAATTCGATTTCTACATACGGAACAGAATCAAGCTTAG 1413 0.3822 MTTSHPIVDSLPVGFRFRPTDEELVNHYLKNKLLGNDYIVNNVIAEVDVCKFEPWELPDVSVIKSDDPEWFFLCPCDYKYAKSRRFNRATKRGFWKTTGNDRKIKIRGTDKVIGIKKTLVYYNGRIPGVKSSNWVIHEYHDVTLEENKRTFVLSRLIRKAEKKAEEGAETKAEEEADIMICDEGEPSRHMTMTTSYPIVDSLPVGFRFRPTDEELVNHYLKNKLLGNDSSVIAEVDFCKFEPWELPAISMIKSHDPEWFFLCPRDYKYAKSKKINRATKCGFWKPTGKDRNIKIRGTNNVIGTKKTLVYYKGRAPHDVKTNWVMHEYDNVTFEDNQFHFSKASFRSNFNSESFNFYSLQLSFRIVRSISIQFNFDSVSDSLKLQFSFVHPSIQPTIQTEDGFLKLAHPHGIAILCPVHCSTYVVQGSKGNDLMSSSLSSGLSPVVCSGFCLTSQNFTKLIRFLHTEQNQA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00782 470 ProSiteProfiles NAC domain profile. 11 159 IPR003441 GO:0003677|GO:0006355
Tsu08g00782 470 SUPERFAMILY NAC domain 8 159 IPR036093 GO:0003677|GO:0006355
Tsu08g00782 470 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 181 - -
Tsu08g00782 470 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 199 329 - -
Tsu08g00782 470 SUPERFAMILY NAC domain 188 336 IPR036093 GO:0003677|GO:0006355
Tsu08g00782 470 Coils Coil 157 177 - -
Tsu08g00782 470 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
Tsu08g00782 470 Pfam No apical meristem (NAM) protein 203 328 IPR003441 GO:0003677|GO:0006355
Tsu08g00782 470 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 8 181 - -
Tsu08g00782 470 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 199 329 - -
Tsu08g00782 470 ProSiteProfiles NAC domain profile. 202 345 IPR003441 GO:0003677|GO:0006355
Tsu08g00782 470 Gene3D NAC domain 211 352 IPR036093 GO:0003677|GO:0006355
Tsu08g00782 470 Gene3D NAC domain 20 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00782 Tsu-Chr8 8303031 8332878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00782 199 327 NAC Transcription Factor Family AT4G35580 62.595 2.16e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu08g00782 NAM 9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00782 - - mtr:MTR_8g023900 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00782 08 8303031 8332878 Tsu08g00782 08 8303031 8332878 ECH