Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00760 ATGTTCTCCATCATTGTCCACATTTTCCGCTCCGGAAATCTTAATGGTTTCATTGAGTTTTCTTTTATTACTTCACTTCAATCACTTTCTCATGTTAATCTTTCACATAATAAACTTCGTGGTAATCttcaaaatcagtttttttCAGTTGTTAATCATGTATTAGTACTTGATTTGAGTTATAATCATTTTGCTGGTGAATTACCTAGTAGTAATGGCAGTGGAAATGGAAATGGAAGTGTTATTCAGGAATTGGATTTGTCTAGTAATCACTTCAATGGAACATTATCAGTTTCTTTGATTCAGATTCTTGCTGCAAAAGGGAATTTGATTTCTTTCAATGTTAGTAACAACAGTTTCACAGGAGCATGTTCTAAGCTTGAGAGATTTAGAGCaggtttcaattttcttctaTCAGGGAATATACCAGTTGATATTTATGACGCTGTTTCACTCACAGAAATATCATTGCCACTTAATAGAATTAATGGAACAATTGATGATGGAATTGTTAACCTTAGAAATCTCACAATTTTGGAGCTTTATTCCAATAATTTAACAGGTTCTATTCCTAAGGAAATTGGTAAACTTTCCAAATTGGAAAGGTTACTTCTTCATGTCAACAATTTGACAGGTTCAATTCCATCATCTTTGATGAATTGTCACAATCTTGTTGTGATGAATTTAAGGGTCAATGATTTGGAAGGAAATCTTACGGCGTTCAATTTCTCGGGATTTGGTAGACTTGTTACCCTTGATCTTGGCAATAATAGGTTTAGCGGTGTTTTACCGCCGAGTCTTTATGATTGTAAGTCACTTGCTGCATTAAGGCTTGCATCTAATCATCTCGAGGGACAGGTTTCATCTGAGGTACTTGGACTTGAGTCTCTTTCGTTCTTATCGATTTCTAATAACATGTTGAAGAATATCACTGGTGCTCTAAGAATACTCACTGGCCTTAAGAAGCTTAGTACCCTTATGCTCTCCAAGAATTTTTACAACGAAATGTTACCGAACGATGCGAACGTGATAGGCTCTGATGGATTCCAAAAGATCCAAGTTTTAGGGTTAGGGGGTTGTAATTTCACAGGTCAAATACCAAGTTGGCTTATAAAGCTGAAGAAGCTTGAGGCCGTGGACCTGTCCTATAATCTATTAAGTGGTTCGATTCCTCCTTGGTTAGGTACACTTTCTGAACTATTCTACATAGACCTGTCTGTTAACCAACTTACTGGCCCGTTTCCGATAGAGCTTACGAAACTCCCGGCACTAGCATCACAACTAGCAAATGATAACGTAGAAAGGACTTACTTGGAGTTACCTGTCTTTGCTAATGCTAACAATGTTTCTTTGTTGCAATACAATCAACTTTCAAGCCTTCCACCGGCAATTTATCTCGGAACCAATCACCTTAATGGCAGCATCCCGATTGAAGTTGGCCAATTGATAGTTCTTCATCAGCTGGACCTGAAGTTAAACAGCTTCTCTGGCAATATACCGGATCAATTTTCAAACTTGAGAAACTTAGAGACACTAGACCTCTCGGGAAATCAACTATCAGGCGAAATTCCTGCTTCGCTCAATAATTTACATTTCTTGTCATTTTTCAGTGTAGCGAACAATAATCTTCATGGTCAGATACCAACAGGTGCTCAGTTTAATACTTTTTCCAACACCAGCTTTGAAGGAAATCCGCAATTGTGCGGTTTGGTTATTCAGCGCCCTTGTTCTTCTCAGAAAAATGCTACTAGCACTCCAGCTAGTAGCAAATCCAGTAAAAAAGTAATAGTCATACTTATTATTGTTGTCAGTTTCGGCATAGCTACTATGGTAACATTGTTGACACTGTGGATACTCTCCAAGAGGAGGGTCAATCCAAGAGGAGATTCTGATAAGATTGAACTCGAATCAATTTCTCCGTACTCGAACAGCGGCGTTCATCCTGAGGTTGACAGAGAGGCTAGCCTAGTGGTATTGTTCCCCAACAAAAACAGTGATACCAAGGATCTTTGCATATTAGAGATTATAAAAGCAACTGAAAATTTCAGTCAGGCAAATATAGTAGGATGTGGTGGTTTCGGCTTGGTTTATAAAGCAACATTTCAAAATGGAACTAAACTAGCGATCAAGAAGCTTTCAGGAGATTTAGGCCTTATGGAAAGGGAATTTAAAGCTGAAGTTGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTAGCATTGCAAGGCTATTGCGTGCATGATGGTTATCGACTACTAATATATAATTACATGGAGAATGGAAGTCTCGATTACTGGTTGCACGAAAAGTCTGATGGTGCAACTCAACTTGATTGGCCGACTCGTTTGAAGATTGCACAAGGAGCAAGTTGTGGTTTGGCCTATTTGCATATAACATGCGAACCGCACATCGTGCACCGTGACATAAAATCAAGTAATATACTCCTTAACGACAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGTCGCGGTTGATTCTTCCGTATCAAACCCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCTCCAGAGTATGGACAAGCATGGGTGGCTACTCTAAGAGGTGATGTGTACAGCTTTGGAGTTGTTTTACTCGAGCTTCTCACTGGAAGAAGACCTATGGATGTATGCAAGCCGAGAATTTCAAGGGAATTGGTTAGCTGGGTTCAACAGAtgaaaattgaaggaaaacaaGAACAAGTATTTGACTCGAATCTACGAGGGAAAGGATTTGAAGGAGAGATGCTACACGTACTTGATGTGGCATGCATGTGTGTCAACATGAATCCTTTCAAGAGACCACGCATCAAAGAAGTTGTTGAATGGTTAAAAAATGTTGGATCGGAAAACCAGCTCAGAAATAACGATTAA 2901 0.384 MFSIIVHIFRSGNLNGFIEFSFITSLQSLSHVNLSHNKLRGNLQNQFFSVVNHVLVLDLSYNHFAGELPSSNGSGNGNGSVIQELDLSSNHFNGTLSVSLIQILAAKGNLISFNVSNNSFTGACSKLERFRAGFNFLLSGNIPVDIYDAVSLTEISLPLNRINGTIDDGIVNLRNLTILELYSNNLTGSIPKEIGKLSKLERLLLHVNNLTGSIPSSLMNCHNLVVMNLRVNDLEGNLTAFNFSGFGRLVTLDLGNNRFSGVLPPSLYDCKSLAALRLASNHLEGQVSSEVLGLESLSFLSISNNMLKNITGALRILTGLKKLSTLMLSKNFYNEMLPNDANVIGSDGFQKIQVLGLGGCNFTGQIPSWLIKLKKLEAVDLSYNLLSGSIPPWLGTLSELFYIDLSVNQLTGPFPIELTKLPALASQLANDNVERTYLELPVFANANNVSLLQYNQLSSLPPAIYLGTNHLNGSIPIEVGQLIVLHQLDLKLNSFSGNIPDQFSNLRNLETLDLSGNQLSGEIPASLNNLHFLSFFSVANNNLHGQIPTGAQFNTFSNTSFEGNPQLCGLVIQRPCSSQKNATSTPASSKSSKKVIVILIIVVSFGIATMVTLLTLWILSKRRVNPRGDSDKIELESISPYSNSGVHPEVDREASLVVLFPNKNSDTKDLCILEIIKATENFSQANIVGCGGFGLVYKATFQNGTKLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHDGYRLLIYNYMENGSLDYWLHEKSDGATQLDWPTRLKIAQGASCGLAYLHITCEPHIVHRDIKSSNILLNDKFEAHVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVLLELLTGRRPMDVCKPRISRELVSWVQQMKIEGKQEQVFDSNLRGKGFEGEMLHVLDVACMCVNMNPFKRPRIKEVVEWLKNVGSENQLRNND 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00760 966 Gene3D Ribonuclease Inhibitor 242 585 IPR032675 -
Tsu08g00760 966 Gene3D Phosphorylase Kinase; domain 1 649 757 - -
Tsu08g00760 966 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Tsu08g00760 966 PRINTS Leucine-rich repeat signature 249 262 - -
Tsu08g00760 966 PRINTS Leucine-rich repeat signature 506 519 - -
Tsu08g00760 966 Pfam Leucine Rich Repeat 508 530 IPR001611 GO:0005515
Tsu08g00760 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Tsu08g00760 966 ProSiteProfiles Leucine-rich repeat profile. 508 531 IPR001611 GO:0005515
Tsu08g00760 966 SUPERFAMILY L domain-like 452 568 - -
Tsu08g00760 966 PANTHER LEUCINE RICH REPEAT KINASE 2 122 957 - -
Tsu08g00760 966 PANTHER LEUCINE RICH REPEAT KINASE 2 14 125 - -
Tsu08g00760 966 PANTHER OS06G0692500 PROTEIN 122 957 - -
Tsu08g00760 966 PANTHER OS06G0692500 PROTEIN 14 125 - -
Tsu08g00760 966 Pfam Protein tyrosine and serine/threonine kinase 686 952 IPR001245 GO:0004672|GO:0006468
Tsu08g00760 966 SUPERFAMILY L domain-like 123 448 - -
Tsu08g00760 966 Gene3D Transferase(Phosphotransferase) domain 1 758 966 - -
Tsu08g00760 966 SMART serkin_6 682 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00760 966 SMART LRR_typ_2 506 530 IPR003591 -
Tsu08g00760 966 SMART LRR_typ_2 246 270 IPR003591 -
Tsu08g00760 966 SMART LRR_typ_2 294 316 IPR003591 -
Tsu08g00760 966 SMART LRR_typ_2 373 397 IPR003591 -
Tsu08g00760 966 SMART LRR_typ_2 173 197 IPR003591 -
Tsu08g00760 966 SMART LRR_typ_2 26 50 IPR003591 -
Tsu08g00760 966 SUPERFAMILY L domain-like 15 165 - -
Tsu08g00760 966 Gene3D Ribonuclease Inhibitor 3 134 IPR032675 -
Tsu08g00760 966 Gene3D Ribonuclease Inhibitor 135 241 IPR032675 -
Tsu08g00760 966 ProSiteProfiles Protein kinase domain profile. 682 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00760 966 SUPERFAMILY Protein kinase-like (PK-like) 670 953 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00760 Tsu-Chr8 8055599 8059964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00760 21 580 Miscellaneous Gene Families AT1G17240 50.588 4.18e-177 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Tsu08g00760 PK_Tyr_Ser-Thr 8.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00760 - - gmx:100807989 1452.57