Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00756 ATGGCGATTGATAATGAAGAACTCAAGGACGAGAAGAATCCCCGCCCACTCGACGAGGATGACATAGCTCTTCTCAAAACCTATGGATTGGGACCTTATTCCACAGGCATAAAAAAAGTGGAGAAGGAAATCAAAGATATGGCAAAGAAAGTAAATGACTTATGTGGTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTATCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTGCAGGTAGCAAGATgcacaaaaattataaatccaAACTCCGAGGATGCCAAATATGTTATCAATGTGAAGCAGATTGCAAAGTTTGTTGTTGGGCTCGGAGACAAGGTTTCCCCCACTGACATAGAGGAAGGAATGCGCGTTGGTGTTGATAGAAACAAATATCAGATTCAAATTCCTTTGCCTCCAAAAATTGATCCAAGTGTTACAATGATGACAGTTGAAGAGAAACCAGATGTGACATATAATGATGTCGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTGCTTTGTTATGGTCCACCAGGAACTGGCAAAACACTTCTAGCCAGGGCTGTTGCTAACAGAACTGATGCCTGTTTTATTAGAGTCATTGGAAGTGAACTAGTTCAGAAATATGTTGGTGAGGGGGCTCGGATGGTTCGTGAGCTATTTCAGATGGCTCGTTCAAAGAAGGCATGCATTGTGTTCTTCGATGAAGTTGATGCAATTGGAGGTGCACGgtttgatgatggtgttggtgGTGATAACGAGGTTCAGCGAACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACAAACagGCCCGACACTCTGGACCCAGCACTATTACGACCTGGACGATTGGATCGTAAAGTTGAATTCGGCCTTCCTGATTTAGAGAGCAGGACACAGATATTCAAGATTCACACAAGAACCATGAACTGTGAAAGGGATATCCGTTTTGAACTTCTAGCTCGGCTTTGCCCAAACTCTACTGGAGCTGATATAAGGAGTGTGTGCACAGAAGCTGGTATGTATGCTATCCGCGCCCGAAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTGAATAAAGTCATCAAAGGGTACCAGAAGTTCAGTGCCACTCCCAAATATATGGTCTACAATTGA 1278 0.4233 MAIDNEELKDEKNPRPLDEDDIALLKTYGLGPYSTGIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00756 425 Gene3D - 157 336 IPR027417 -
Tsu08g00756 425 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 6 423 - -
Tsu08g00756 425 Pfam ATPase family associated with various cellular activities (AAA) 204 336 IPR003959 GO:0005524|GO:0016887
Tsu08g00756 425 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 423 - -
Tsu08g00756 425 ProSitePatterns AAA-protein family signature. 307 325 IPR003960 GO:0005524|GO:0016887
Tsu08g00756 425 SMART AAA_5 200 339 IPR003593 -
Tsu08g00756 425 CDD AAA 170 337 - -
Tsu08g00756 425 Gene3D - 338 419 - -
Tsu08g00756 425 Pfam AAA+ lid domain 359 402 IPR041569 -
Tsu08g00756 425 Gene3D - 33 156 IPR012340 -
Tsu08g00756 425 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 97 408 IPR005937 GO:0005737|GO:0030163|GO:0036402
Tsu08g00756 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00756 Tsu-Chr8 8010985 8014707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00756 169 390 Calmodulin-binding Proteins AT3G56690 37.220 1.63e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00756 K03061 - gmx:100820271 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00756 08 8010985 8014707 Tsu08g00756 08 8010985 8014707 ECH
Tsu08g00756 08 8010985 8014707 Tsu07g00542 07 4226569 4228660 ECH