Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00751 ATGTCAACACAAACTATCCTCAAATTCTTCACAATAATTGCTTTCATAGCAAAATCATTTCAAGAAAACATATTCAAGATTCTTGATAAACTCTACAAGAATTATTTCTATGTTGGTGGTTCAATGAAGGAAATAGATCAAAGTGAAAGTGAATGTTGTTCAGTTTGTTTAAGTCAAATGTGTAAAGGAGAAAAAGTTAGATTATTACCTTTATGTAATCATAGATATCATTCTGATTGTATTGGTGCTTGGTTGAAGAATAATACTACATGTCCTCTTTGTAGAAGCAAAATCAGTGACCATAGTATTAATCAGAATCAGCAAAAACAGGTTAAACCTTTTGGAGAATCTATGGTTAATCTTATACAAAGTTTCTCTGATGTAATTGTAGCTATTCTTTATATGATTCTTCCATCTAGTGTCACTGAAAGTTTCCCTATTGTTCATTAA 450 0.2978 MSTQTILKFFTIIAFIAKSFQENIFKILDKLYKNYFYVGGSMKEIDQSESECCSVCLSQMCKGEKVRLLPLCNHRYHSDCIGAWLKNNTTCPLCRSKISDHSINQNQQKQVKPFGESMVNLIQSFSDVIVAILYMILPSSVTESFPIVH 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00751 149 PANTHER RING-H2 FINGER PROTEIN ATL2 46 111 - -
Tsu08g00751 149 SMART ring_2 53 94 IPR001841 -
Tsu08g00751 149 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
Tsu08g00751 149 SUPERFAMILY RING/U-box 42 101 - -
Tsu08g00751 149 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 46 111 IPR044675 -
Tsu08g00751 149 CDD RING-H2_PA-TM-RING 52 95 - -
Tsu08g00751 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 102 IPR013083 -
Tsu08g00751 149 Pfam Ring finger domain 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00751 Tsu-Chr8 7957670 7958272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00751 53 109 Carbohydrate Esterase AT3G14320 40.000 1.92e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00751 - - cam:101495833 211.846