Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00750 atgggTGCAAATGCAATATCAGGAACAAGTGATACATTAGGTGAATCTAATGCAATTGAATTAACAGGAAAAATCATGGTGGTTGCTATAATTTTTCTGTTCATGGTTGTTATGTTTGTTCTAATGCTTCATCTTTATGCCAAGTGGTTTTGGTGGCGGTTCGAGGAAAGAACGGTTCCTCAACCAACAAACCGCCGTCGACGTGGACGGCGGTTTGTTTTTGCTCCTGGTCAAGATCCTGTTGTCTATGGAACTCACCAAACTGGTCTTGATGCTTCAATTCTTAAGTCTTTACCTGTTTTGGTTTTCAAAAGTGAAGATTTCAAAGATGGTTTAGAATGTGCTGTTTGTCTTTGTGATATTGTTGAAGGAGAAAAAACAAGACTTTTACCAAAATGCAATCATGGGTTTCATTTAGATTGTATTGATATGTGGTTTCAATCTCATTCTACTTGTCCTCTTTGTAGGAATTTAGTTTCTGTTGAATACTCAAATGGTGAAGAGATGAATGCGTTGGTTTCATCAGAAAGTGATGAAAATTTGAGTCCTAATGGTTTAGAGTCTTCAAATTTTCCTACAAATGTTTTGGTTTGGGGGAATCATCAAACACAAGTTAATTCTTCTAGTGTTTGTTTGGATGAACATGAAGGAAGTTCTCaacaacaatcttattcaacaacatcatcatcatcatgttctTTTGATGGTGAAAATGTTAACAATAGTAGATGTAATGGAAATGGAATGTTGGTGATTGATATACCATTACAAAATGAGTGTGTTGAAGATGAAATGAAATCACCAATGTCATCAAGGTTGAGATCATTTAAGAGGCTTTTAAGTAGGGATAAGAAGTTAAGTCCTTCAAGTCCTGGTTCTATGGATGTTGAACTAGGCTCGAGCTAG 906 0.3433 MGANAISGTSDTLGESNAIELTGKIMVVAIIFLFMVVMFVLMLHLYAKWFWWRFEERTVPQPTNRRRRGRRFVFAPGQDPVVYGTHQTGLDASILKSLPVLVFKSEDFKDGLECAVCLCDIVEGEKTRLLPKCNHGFHLDCIDMWFQSHSTCPLCRNLVSVEYSNGEEMNALVSSESDENLSPNGLESSNFPTNVLVWGNHQTQVNSSSVCLDEHEGSSQQQSYSTTSSSSCSFDGENVNNSRCNGNGMLVIDIPLQNECVEDEMKSPMSSRLRSFKRLLSRDKKLSPSSPGSMDVELGSS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00750 301 PANTHER RING-H2 FINGER PROTEIN ATL3 8 292 - -
Tsu08g00750 301 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 292 IPR044675 -
Tsu08g00750 301 SMART ring_2 114 155 IPR001841 -
Tsu08g00750 301 MobiDBLite consensus disorder prediction 209 230 - -
Tsu08g00750 301 CDD RING-H2_EL5_like 113 156 - -
Tsu08g00750 301 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Tsu08g00750 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 161 IPR013083 -
Tsu08g00750 301 SUPERFAMILY RING/U-box 94 162 - -
Tsu08g00750 301 Pfam Ring finger domain 113 156 IPR001841 -
Tsu08g00750 301 MobiDBLite consensus disorder prediction 280 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00750 Tsu-Chr8 7945274 7946681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00750 20 284 C3H Transcription Factor Family AT1G53820 43.813 2.51e-64 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00750 - - cam:101491184 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00750 08 7945274 7946681 Tsu08g00750 08 7945274 7946681 ECH
Tsu08g00750 08 7945274 7946681 Tsu08g00750 08 7945274 7946681 PCT