Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00746 atgaacaaaataaaacaatctcTTGCCGGAATCTCGAATTCCGGCAACAACAAGAAAAAACTCTTCATCTCCCTTTTCACAACCCTTCTCATTGTAGCTTCAATTGTTGCCATTGttgcatcaacaacaaaaaattcaaacaaaaccaaaaacaacaacattGCTACTTCTTCtctttcactttctcaccattcACACATCATTATAAGAAATGCTTGCACTACTACACTCTACCCTGAACTCTGTTTCTCAGCCTTAGCTTCTGAGCCAAACATAACTCACAAAGTCACAAACCACAAAGATGTAATTTCATTGTCTCTTAATATCACAACGAGAGCCGTTGAACACAATTACTTCACCGTCGAAAAACTCCTCTTGCGAAAAACTCTcacaaaaagagagaaatgtgCTCTTCATGATTGTTTAGAAACCATTGATGAAACACTAGATGAGCTTAAAGAAGCAGAGGAAGATCTTGTACTTTACCCAACTAAAAAGTCACTTTATCAACATGCTAATGATCTTAAAACGCTCATAAGTTCCGCCATTACCAAccagGTAACTTGCTTGGATGGATTCTCACACGACGGAGCCGATAAGCTTGTAAGGAAGGTTCTACAAGCGGGACAAATCCACGTCGAACACATGTGTAGTAATGCATTAGCCATGATTAAGAATATGACGGACACAGAtatagcggaatttgaacaaactaaCACGGTGTTGGGAAGTGGAAATAGGAAATTATTGGAAGACGAAAGTGGGGTGCAGTGGCCAGAGTGGATATCGGCAGGGGACAGGAGACTACTTCAAGGGGCGGCGGTGAAGGCGGATGTGGTTGTGGCGGCAGACGGAAGTGGGAACTTTAAGACTGTGTCTGAGGCTGTGGCTGCTACTCCTTTGAAGAGTAGTAAGAGATTTGTCATTAAGATAAAAGCTGGGGTGTATAAAGAAAATGTAGATGTGCCAAAGAAAGTAACTAATATAATGTTTTTGGGAGATGGTAGAAGTAATACTATTATCACTGGCAGTAGAAATGTTGTTGATGGAAGCACTACTTTTCACTCAGCTACTGttgCCATAGTTGGAGGGAACTTTTTAGCAAGAGACATAACATTCCAAAACACAGCTGGACCCTCAAAGCACCAAGCAGTTGCCCTAAGAGTTGGTGCTGACCTATCAGCCTTCTACAATTGTGACATCATAGCATACCAAGACACACTTTATGTTCACAACAATAGACAATTTTATGTAAATTGTTTCATCTCTGGTACCGTTGATTTCATCTTTGGCAATGCGGCCGTTGTGTTTCAAAATTGTGACATACATGCTCGGCGTCCTGATTCGGgacaaaaaaatatggtcaCGGCACAAGGTAGAGTTGATCCTAATCAAAACACCGGAATTGTTATACAAAAATGTAGAATTGGTGCTACTAAAGATTTGGAGGGTGTGAAGAACAATTTTCCTACATATCTTGGGAGACCTTGGAAGGAATATTCAAGGACAGTGATTATGCAAAGTAGTATTAGTGATGTTATTCAACCTATTGGGTGGCATGAATGGAATGGTAATTTTGCATTAAATACTTTGGTTTATAGGGAATATCAAAATACTGGACCTGGTGCTGATACCTCTAAGAGGGTTACTTGGAAAGGATTTAAGGTCATTGCTAGTGCTTCTGAGGCCCAAAGTTTTACTGCTGGAAATTTTATTGGTGGGTCTAGTTGGTTGGGCTCAACTGGCTTTTCTTCCAAACAGAGCACAAAAACAATGGATACTATGAAATCTTTCAAAGGTTACGGCAAAGTAGACGAAATAGAACAACAAGCATTCCAAAAAAAGACACGTAAGCgcatcataatcataataatcTCCACCGTTATTCTATTAGCAGTCATCATAGCCGCGGTTGCAGGAATCCTCATACACAAGCGCAACACCTCATCCTCATCCTCTTCTGACTCGCTCCCCAAAACTCAGTTAACACCCGCTACTTCACTCAAAGCAGTTTGCGATGCAACTCAGTACCCTAACTCGTGTTTCGCCGCAATCTCATCTCTTCCAGATTCCAACACAACCGATCCTGAACAACTTTTCAAACTATCTCTCAAAGTCGCCATTGATGAACTCTCAAATCTCACGCGCGGTTTCAGTGATAAACTCCAAGCGAGTAATGACACGCGCCTTAAGAAAGCTATTGAAGTTTGCGGTTCCGTTTTGAACGATTCGTTAGATCGGTTAAACGATTCAATGTCGACGATTGTTTCCGGTGAGAAGATTCTTTCTCCGACGAAGATTCGTGATGTTGAGACTTGGATTAGTGCGGCGTTAACGGATCATGACACGTGTTTGGATGCAGTTGGTGAATTGAACTCAACCGCTGCGAAAAATATTCGTAGTGAAATTGAAACTGCGATGAGAAACTCAACGGAGTTTGCGAGTAATAGTTTAGCTATTGTGACTAAGGTGATAAGATTATTATCGAATTTCGAGGTTTCGAATCATCACCGGAGATTGCTCGGAGATTTTCCGGATTGGTTAGGAGCGGCGGAGAGGAGGCTGCTTGCGGGGGAAGGGAATGGGACTACGGTGACCGGGACGGTGACGCCGGATGCGGTGGTGGCGAAGGATGGAAGTGGACAGTATAAGACGATTGCGGAGGCGTTGAAGATGGTAGCGAAGAAGAGTGAGAAGAGATTTGTGGTGTATGTGAAGAAAGGTGAATATGTAGAGAATATTGATTTGGATAAGAATACTTGGAATGTGATGATTTACGGTGATGGTATGACGGAAACCGTCGTAAGTGGTAGCCGGAATTTCATGGATGGCACACCTACGTTTGAGACTGCAACTTTTgctGTTAAAGGCAAGGGATTCATTGCTAAAGACATACAATTCAAGAACACAGCAGGTGCATCTAAGCATCAGGCAGTGGCATTCCGATCCGGCTCGGATCAATCTGTGTTCTATAAGTGTTCATTTGTGGGATTTCAGGATACCCTTTATGCACATTCAAACCGTCAATTCTACCGTGAATGTGAAATTACAGGTACCATAGATTTCATATTCGGAAACGCTGCTGTTGTGTTCCAAAGTTGCAAAATCATGCCTAGGCAACCACTACCAAACCAGTTCAACACCATCACAGCTCAGGGTAAGAAGGATCCTAATCAAAACACTGGAATTGTGATCCAGAAATCAACTATCACTACACTACCTAATGACAATCTCGTAGCAGCTACTTACCTTGGTAGACCATGGAAAGATTTCTCCACTACTATTATCATGAAATCAGAAATTGGGTCATTCTTGAAACCAGTAGGGTGGATAAGTTGGGTTTTTAATGTGGATCCTCCAAGTAGCATCCTCTATGCTGAATACCAGAACACCGGGCCAGGAGCTGCAGTAGCCCAGAGAGTCAAATGGGCCGGTTATAAGCCTTCTCTCGAAGACGGAGAAGCTCTGAAGTTCACTGTGGATTCCTTTATCCAGGGCCCAGAGTGGTTGCCAAATGCTGCTGTGCAGTTTGATTCTACCCTGTAA 3546 0.4072 MNKIKQSLAGISNSGNNKKKLFISLFTTLLIVASIVAIVASTTKNSNKTKNNNIATSSLSLSHHSHIIIRNACTTTLYPELCFSALASEPNITHKVTNHKDVISLSLNITTRAVEHNYFTVEKLLLRKTLTKREKCALHDCLETIDETLDELKEAEEDLVLYPTKKSLYQHANDLKTLISSAITNQVTCLDGFSHDGADKLVRKVLQAGQIHVEHMCSNALAMIKNMTDTDIAEFEQTNTVLGSGNRKLLEDESGVQWPEWISAGDRRLLQGAAVKADVVVAADGSGNFKTVSEAVAATPLKSSKRFVIKIKAGVYKENVDVPKKVTNIMFLGDGRSNTIITGSRNVVDGSTTFHSATVAIVGGNFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDIIAYQDTLYVHNNRQFYVNCFISGTVDFIFGNAAVVFQNCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEGVKNNFPTYLGRPWKEYSRTVIMQSSISDVIQPIGWHEWNGNFALNTLVYREYQNTGPGADTSKRVTWKGFKVIASASEAQSFTAGNFIGGSSWLGSTGFSSKQSTKTMDTMKSFKGYGKVDEIEQQAFQKKTRKRIIIIIISTVILLAVIIAAVAGILIHKRNTSSSSSSDSLPKTQLTPATSLKAVCDATQYPNSCFAAISSLPDSNTTDPEQLFKLSLKVAIDELSNLTRGFSDKLQASNDTRLKKAIEVCGSVLNDSLDRLNDSMSTIVSGEKILSPTKIRDVETWISAALTDHDTCLDAVGELNSTAAKNIRSEIETAMRNSTEFASNSLAIVTKVIRLLSNFEVSNHHRRLLGDFPDWLGAAERRLLAGEGNGTTVTGTVTPDAVVAKDGSGQYKTIAEALKMVAKKSEKRFVVYVKKGEYVENIDLDKNTWNVMIYGDGMTETVVSGSRNFMDGTPTFETATFAVKGKGFIAKDIQFKNTAGASKHQAVAFRSGSDQSVFYKCSFVGFQDTLYAHSNRQFYRECEITGTIDFIFGNAAVVFQSCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSTITTLPNDNLVAATYLGRPWKDFSTTIIMKSEIGSFLKPVGWISWVFNVDPPSSILYAEYQNTGPGAAVAQRVKWAGYKPSLEDGEALKFTVDSFIQGPEWLPNAAVQFDSTL 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00746 1181 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 228 IPR035513 -
Tsu08g00746 1181 Coils Coil 138 158 - -
Tsu08g00746 1181 SMART PMEI_2 64 223 IPR006501 GO:0004857
Tsu08g00746 1181 SMART PMEI_2 663 820 IPR006501 GO:0004857
Tsu08g00746 1181 ProSitePatterns Pectinesterase signature 2. 1016 1025 IPR033131 -
Tsu08g00746 1181 CDD PMEI-like_3 72 228 - -
Tsu08g00746 1181 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Tsu08g00746 1181 Gene3D - 272 588 IPR012334 -
Tsu08g00746 1181 Gene3D - 866 1181 IPR012334 -
Tsu08g00746 1181 Pfam Plant invertase/pectin methylesterase inhibitor 668 820 IPR006501 GO:0004857
Tsu08g00746 1181 Pfam Plant invertase/pectin methylesterase inhibitor 69 223 IPR006501 GO:0004857
Tsu08g00746 1181 TIGRFAM PME_inhib: pectinesterase inhibitor domain 652 823 IPR006501 GO:0004857
Tsu08g00746 1181 TIGRFAM PME_inhib: pectinesterase inhibitor domain 58 227 IPR006501 GO:0004857
Tsu08g00746 1181 PANTHER PECTINESTERASE 599 1178 - -
Tsu08g00746 1181 SUPERFAMILY Pectin lyase-like 273 585 IPR011050 -
Tsu08g00746 1181 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 668 824 IPR035513 -
Tsu08g00746 1181 SUPERFAMILY Pectin lyase-like 868 1178 IPR011050 -
Tsu08g00746 1181 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 228 IPR035513 -
Tsu08g00746 1181 CDD PMEI-like_3 670 823 - -
Tsu08g00746 1181 PANTHER PECTINESTERASE 1-RELATED 13 582 - -
Tsu08g00746 1181 Pfam Pectinesterase 872 1166 IPR000070 GO:0030599|GO:0042545
Tsu08g00746 1181 Pfam Pectinesterase 278 574 IPR000070 GO:0030599|GO:0042545
Tsu08g00746 1181 Gene3D Invertase/pectin methylesterase inhibitor family protein 666 824 IPR035513 -
Tsu08g00746 1181 PANTHER PECTINESTERASE 13 582 - -
Tsu08g00746 1181 PANTHER PECTINESTERASE 1-RELATED 599 1178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00746 Tsu-Chr8 7891598 7909018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00746 13 583 Carbohydrate Esterase AT3G14310 68.995 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00746 K01051 - pvu:PHAVU_010G123100g 1749.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00746 08 7891598 7909018 Tsu08g00746 08 7891598 7909018 ECH
Tsu08g00746 08 7891598 7909018 Tsu08g00746 08 7891598 7909018 PCT