Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00735 ATGGAAATGGACAAGGCCATTTCCAAGTCATTTACTAGCCTTCAAATTAATACCAAATCCAACACTACCAAAGACTCAAAACCATGGAAATGGATGTGTTTAATTTCATTCATTCCATTTTTTACAAAACATGAAGATCAAATTTTAGAAGACATTTTCCATGATGCTGAAGAAAATATTCCAATATCTATTGAGACTTTTGAAGGTGAAACTACTTCATCTCAATTGAAACAATCCTATTGTGCTATTTGCATGGAAGCTAAACATGTTAAAGAAATGTATGAAAACCAAAAGTGTTCACATTCTTTTTGTGAAGATtgtgttgaaagttatctagTCGCAAAAATTCAAGAGAATATATCAAAGATAAAATGTCCTCATGCAAAATGTAAGGTTATTTTGGAGCctcaaaattgtatttcaattaTAGCAAAGGATATGTTTGAAAGATGGGAAAATGCAATTGTTGATAATTTGGTGTTAGGATCACAAAAAATTTATTGTCCTTATAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTGTTACGGCTTCGGAATGTCCGAATTGTCATAGATTGTTTTGTGCACAATGTAAGGTTTCATGGCACGCCGGAGTTGATTGCAGAGAGTTTAAAAGCCTGATCGGCGAGCGAGAGAGCGAAGATCTAATATTGGTAGTGGAACTTGCTAAGAACCAGAATTGGAAAAGATGTTCAAAATGTGGCTTCTATGTGGAAAGAAATGAAGGATCTAAGCCAGACAGCAGCGAGCCAGCATCAagagcaagtcagagagctcaAGTTTTTCTCGCCACGTTCTGGCTAAGCGAGGTTGCAGCGAGACAGTCTCAGGAAGCTCTTGCCACGTTCTGGCTGAGCGAGAATGCAGCGAAGCTCTTGCCACGTTCTGGCTGA 924 0.3539 MEMDKAISKSFTSLQINTKSNTTKDSKPWKWMCLISFIPFFTKHEDQILEDIFHDAEENIPISIETFEGETTSSQLKQSYCAICMEAKHVKEMYENQKCSHSFCEDCVESYLVAKIQENISKIKCPHAKCKVILEPQNCISIIAKDMFERWENAIVDNLVLGSQKIYCPYNDCSAMLVNDGNEVVTASECPNCHRLFCAQCKVSWHAGVDCREFKSLIGERESEDLILVVELAKNQNWKRCSKCGFYVERNEGSKPDSSEPASRASQRAQVFLATFWLSEVAARQSQEALATFWLSENAAKLLPRSG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00735 307 ProSiteProfiles TRIAD supradomain profile. 77 253 IPR044066 -
Tsu08g00735 307 SUPERFAMILY RING/U-box 78 157 - -
Tsu08g00735 307 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 254 IPR031127 GO:0004842|GO:0016567
Tsu08g00735 307 ProSiteProfiles Zinc finger RING-type profile. 81 129 IPR001841 -
Tsu08g00735 307 ProSitePatterns Zinc finger RING-type signature. 99 108 IPR017907 -
Tsu08g00735 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 160 IPR013083 -
Tsu08g00735 307 SUPERFAMILY RING/U-box 159 215 - -
Tsu08g00735 307 SMART ibrneu5 149 211 IPR002867 -
Tsu08g00735 307 Pfam IBR domain, a half RING-finger domain 152 211 IPR002867 -
Tsu08g00735 307 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 54 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00735 Tsu-Chr8 7780636 7784157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00735 81 253 C3H Transcription Factor Family AT2G19610 24.725 1.10e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00735 K11975 - gmx:100816161 272.707