Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00734 ATGGACAAGGACATTTCCAAATCATTTACTAGCCTTCAAATTAATACCAAATCCAACACTACCAAAGACGCAAACCAAATCAACaattttcatgaaaaaaaatcaagttctTCTTCAAATCACAAATGGTTGTTTTTCACTTCATGCATTCCATTTTGTACTAGTAAACACTTGAAGAAAAATGTGTGTGAGGGCATAGAGGGAAATTCATCCTCTACAAAACATGAAGATCAAATTCAAGAAGACATTTTCCATGATGCTGAAGAAAATATTCCAATATCTAAAGGTGAATCTTCTTCATCTCAATTGAAACAATCCTATTGTGCTATTTGCATGGAAGCTAAACATGTTAAAGAAATGTTTGAAAACCAAAAGTGTTCACATTCTTTTTGTAAAGATTGTGTTGGAAGTTATCTAGTTGCAAAAATTCAAGAGAAAATAGCAAAGATAAAATGTCCTCAGGCAAAATGTAAGGTTATTTTGGAGGctcaaaattgtatttcaattaTACCAAAGGATATCTTTGAAAGATGGGAAAATGCAATTGTTGAGAATTTGGTGTTAGGATCGCAAAAGTTTTATTGTCCTTTTAAAGATTGTTCAGCTATGTTGGTGAATGATGGAAATAATGTTGTGACGGCTTCGGAATGTCCGAATTGTCATAGATTGTTTTGTGCACAATGTAAGGTTTCATGGCACGCCGGAGTTACTTGTAAAGAGTTTAAAAGGTTGAAAGTTGGCGAGCGAGAGAGCAAAGATCTAATGGTAATGGAACTTGCTAAGAACCATAATTGGAAAAGATGTCCAAAATGCAGCTTCTATGTAGAAAAAAACACAGGATGTAATCACATTATATGGAGTGATTCGTTGTCCTTGGTTAATGCCTTTAATGCTTGCAAAGCTCAAACTCGTGGTAAAGCTCTTGCTACAAGTTCTAAGAATCCACCTCATATTGCACTCTTTGTGATTGTTCAAGTCATAGTCAAACATGGTCATCCAAATTTTAGCAAACGTAATTCATCAGCCAATGCCTCAAGTAATGAGAATTCTTAG 1053 0.3343 MDKDISKSFTSLQINTKSNTTKDANQINNFHEKKSSSSSNHKWLFFTSCIPFCTSKHLKKNVCEGIEGNSSSTKHEDQIQEDIFHDAEENIPISKGESSSSQLKQSYCAICMEAKHVKEMFENQKCSHSFCKDCVGSYLVAKIQEKIAKIKCPQAKCKVILEAQNCISIIPKDIFERWENAIVENLVLGSQKFYCPFKDCSAMLVNDGNNVVTASECPNCHRLFCAQCKVSWHAGVTCKEFKRLKVGERESKDLMVMELAKNHNWKRCPKCSFYVEKNTGCNHIIWSDSLSLVNAFNACKAQTRGKALATSSKNPPHIALFVIVQVIVKHGHPNFSKRNSSANASSNENS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00734 350 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 299 IPR031127 GO:0004842|GO:0016567
Tsu08g00734 350 SUPERFAMILY RING/U-box 185 243 - -
Tsu08g00734 350 SMART ring_2 108 155 IPR001841 -
Tsu08g00734 350 ProSiteProfiles Zinc finger RING-type profile. 108 156 IPR001841 -
Tsu08g00734 350 Gene3D - 235 303 - -
Tsu08g00734 350 ProSiteProfiles TRIAD supradomain profile. 104 336 IPR044066 -
Tsu08g00734 350 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 299 - -
Tsu08g00734 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 187 IPR013083 -
Tsu08g00734 350 ProSitePatterns Zinc finger RING-type signature. 126 135 IPR017907 -
Tsu08g00734 350 SUPERFAMILY RING/U-box 249 284 - -
Tsu08g00734 350 Pfam IBR domain, a half RING-finger domain 178 238 IPR002867 -
Tsu08g00734 350 SUPERFAMILY RING/U-box 105 185 - -
Tsu08g00734 350 SMART ibrneu5 176 238 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00734 Tsu-Chr8 7770942 7775311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00734 108 284 ARIADNE family AT2G31780 27.222 3.53e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00734 K11975 - gmx:100815626 297.36