Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00733 ATGGACGAAAAACCTATCTTAAAAATGTTCGAAAACCGAAATTGTTCACACTCTTTTTGTGAAGATTGTGTTGGAAATTATCTAGCTGCAAAAATTCAAGAGAATATAGCAATGGTAAAATGTCCTGATCCAAAATGCAATGATATTTTGGAGCCTTGTGAttgtatttcaattttaccaAAGGAAGTATTTGAAAGATGGGAAAATGCACTATGTGAGAATTTGGTGTTAGGATCACAAAAAATTTATTGTCCTTATAATGATTGTTCAGCTATGTTGGTGAATGATGGAAATGAAGTTGTGACGGTTTCGGAATGTCCACATTGTCATAGATTGTTTTGCGCACAATGTAAAGTGTCATGGCACGCAGGAGTCGATTGTAGAGGGTTTCAAAGCTCGGAAAATGGCGAGCACGGGTGGGCATCAGATCTATCGGCTGTGCAACTTGCTAAGAAAAATAAGTGGAAAAAATGTTCAAAATGCAGCTTCTATGTGGGAAGAAGTCAAGGATGTAATCATATTACATGCAGGTGTGGTCATAAATTTTGCTATGTTTGTGGATCCGATTGGAAGCCGTCACATTATGATTGCAGATAA 597 0.3635 MDEKPILKMFENRNCSHSFCEDCVGNYLAAKIQENIAMVKCPDPKCNDILEPCDCISILPKEVFERWENALCENLVLGSQKIYCPYNDCSAMLVNDGNEVVTVSECPHCHRLFCAQCKVSWHAGVDCRGFQSSENGEHGWASDLSAVQLAKKNKWKKCSKCSFYVGRSQGCNHITCRCGHKFCYVCGSDWKPSHYDCR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00733 198 SUPERFAMILY RING/U-box 72 131 - -
Tsu08g00733 198 SMART ibrneu5 138 197 IPR002867 -
Tsu08g00733 198 SMART ibrneu5 65 127 IPR002867 -
Tsu08g00733 198 ProSiteProfiles TRIAD supradomain profile. 1 198 IPR044066 -
Tsu08g00733 198 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 197 - -
Tsu08g00733 198 Pfam IBR domain, a half RING-finger domain 66 127 IPR002867 -
Tsu08g00733 198 Pfam IBR domain, a half RING-finger domain 148 197 IPR002867 -
Tsu08g00733 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Tsu08g00733 198 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 197 IPR031127 GO:0004842|GO:0016567
Tsu08g00733 198 SUPERFAMILY RING/U-box 142 197 - -
Tsu08g00733 198 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Tsu08g00733 198 SUPERFAMILY RING/U-box 1 74 - -
Tsu08g00733 198 Gene3D - 124 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00733 Tsu-Chr8 7767530 7768448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00733 10 188 C3H Transcription Factor Family AT2G19610 30.729 7.26e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00733 K11975 - gmx:100815626 291.197