Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00732 ATGGAACTTGACGATCAACTTGTAGTAGATGGTATCGACTATTTGTCACGTCGTGATCATGctaaagaaatattaaaaatatctgATGAGTCATATGCAGAGGAAATTCAATTTCAAGAAGTATTATTATGTTCTTCTATAGTGGATGGTGAAATTGATAATGACAATAACACCCATTTGAGAAACCTCAAACACAAAGAGActtttgaagaagatgaatcttcatcttcttcttattattctttttcttcttctcaatcGGAACATTTCTATTGTGCTATTTGTATGGAAGTTAAACCTATTGAAGGAATATTCGATAATCGATTTTGCTCACACTCTTTTTGTGAAGATTGTGTTGGAAGTTATCTAGCTGCAAAAATTCAAGAGAACATAGCAATGGTAAATTGTCCTGATCCAAAATGCAATGGTATTTTGGAGCCTTATGATTGTATTTCAATTATACCAAAGGAAGTATTTGAAAGATGGGAAAATGCATTATGTGAGAattcttcttcttattattctttttcttcttctcaatcGGAACATTTCTATTGTGCTATTTGTATGGACACTAAACCTATTGAAGAAATGTTCGATAATCGAATTTGTTCACACTCTTTTTGTGAAGATTGTGTTGGAAGTTATCTAGCTACAAAAATTCAAGAGAATATAGCAATGGTAAATTGTCCTGATCCAAAATGCAAAGGTATTTTGGAGCCTTATGATTGTATTTCAATTATACCAAAGGAAGTGTTTGAAAGATGGGAAAATGTACTATCTAAACCTATTGATGAAATGTTCGATAATCGAATTTGCTCACACTCTTTTTGTGAAAACTGTGTTGGAAGTTATCTAGCTGCAAAAATTCAAGAGAACATAGCAATGGTAAATTGTCCTGATCCAAAATGCAATGGTATTTTGGATCCTTATGATTGTATTTCAATTATACCAAAGGAAGTGTTTGAAAGATGGGAAAATGCACTATGTGAGTATTATTCttcttattattctttttcATCTTCTCAATCGGAACATTTCTATTGTGCTATTTGTATGGACACTAAACCTATTGAAGAAATGTTCGATAATCGAATTTGTTCACACTCTTTTTGTGAAGATTGTGTTGGAAGTTATCTAGCTGAAAAAATTCAAGAGAATATAGCAATGGTAAATTGTCCATATCCAAAATGCAACGGTATTTTGGAGCCTTATGATTGTATTTCAATTATACCAAAGGAAGTGTTTGAAAGATGGGAAAATGCACTATGTGAGAATTCGGTATTAGCATCACAAAAAATTTATTGTCCTTATAACGATTGTTCAGCTATGTTGGTGAATGATTTAAAGGGAGTTGTGACGATTTCGGAATGTCCACATTGTCATAGATTGTTTTGTGCGCGATGTAAGGTTTCATGGCACGCCGGAGTTGATTGCAGAGAGTTTCAAAGCTTGAAAGTTAGCGACCGAGGGAGGGGAGATCTAATGGCAATGGAATTTGCTAAGAACAAAAGATGGAAAAGGTGTCCAAATTGCAGTATCTTTGTAGAAAAGAAGTATGGATGTACTCGCATTATTTGCAGGTAA 1587 0.3125 MELDDQLVVDGIDYLSRRDHAKEILKISDESYAEEIQFQEVLLCSSIVDGEIDNDNNTHLRNLKHKETFEEDESSSSSYYSFSSSQSEHFYCAICMEVKPIEGIFDNRFCSHSFCEDCVGSYLAAKIQENIAMVNCPDPKCNGILEPYDCISIIPKEVFERWENALCENSSSYYSFSSSQSEHFYCAICMDTKPIEEMFDNRICSHSFCEDCVGSYLATKIQENIAMVNCPDPKCKGILEPYDCISIIPKEVFERWENVLSKPIDEMFDNRICSHSFCENCVGSYLAAKIQENIAMVNCPDPKCNGILDPYDCISIIPKEVFERWENALCEYYSSYYSFSSSQSEHFYCAICMDTKPIEEMFDNRICSHSFCEDCVGSYLAEKIQENIAMVNCPYPKCNGILEPYDCISIIPKEVFERWENALCENSVLASQKIYCPYNDCSAMLVNDLKGVVTISECPHCHRLFCARCKVSWHAGVDCREFQSLKVSDRGRGDLMAMEFAKNKRWKRCPNCSIFVEKKYGCTRIICR 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00732 528 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Tsu08g00732 528 SUPERFAMILY RING/U-box 343 426 - -
Tsu08g00732 528 ProSiteProfiles Zinc finger RING-type profile. 349 397 IPR001841 -
Tsu08g00732 528 SUPERFAMILY RING/U-box 180 263 - -
Tsu08g00732 528 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 342 527 IPR031127 GO:0004842|GO:0016567
Tsu08g00732 528 SUPERFAMILY RING/U-box 429 483 - -
Tsu08g00732 528 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 262 332 IPR031127 GO:0004842|GO:0016567
Tsu08g00732 528 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 179 260 IPR031127 GO:0004842|GO:0016567
Tsu08g00732 528 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 342 527 - -
Tsu08g00732 528 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 169 IPR031127 GO:0004842|GO:0016567
Tsu08g00732 528 ProSiteProfiles Zinc finger RING-type profile. 92 140 IPR001841 -
Tsu08g00732 528 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 262 332 - -
Tsu08g00732 528 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 179 260 - -
Tsu08g00732 528 ProSiteProfiles Zinc finger RING-type profile. 186 234 IPR001841 -
Tsu08g00732 528 Pfam IBR domain, a half RING-finger domain 417 479 IPR002867 -
Tsu08g00732 528 ProSitePatterns Zinc finger RING-type signature. 273 282 IPR017907 -
Tsu08g00732 528 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 169 - -
Tsu08g00732 528 SUPERFAMILY RING/U-box 86 169 - -
Tsu08g00732 528 Pfam RING-type zinc-finger 92 123 IPR027370 -
Tsu08g00732 528 Pfam RING-type zinc-finger 186 217 IPR027370 -
Tsu08g00732 528 SMART ibrneu5 417 479 IPR002867 -
Tsu08g00732 528 ProSitePatterns Zinc finger RING-type signature. 367 376 IPR017907 -
Tsu08g00732 528 ProSitePatterns Zinc finger RING-type signature. 110 119 IPR017907 -
Tsu08g00732 528 ProSiteProfiles TRIAD supradomain profile. 345 528 IPR044066 -
Tsu08g00732 528 Gene3D - 476 528 - -
Tsu08g00732 528 SUPERFAMILY RING/U-box 265 334 - -
Tsu08g00732 528 SMART ring_2 349 396 IPR001841 -
Tsu08g00732 528 SMART ring_2 92 139 IPR001841 -
Tsu08g00732 528 SMART ring_2 186 233 IPR001841 -
Tsu08g00732 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 432 IPR013083 -
Tsu08g00732 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 335 IPR013083 -
Tsu08g00732 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 173 IPR013083 -
Tsu08g00732 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 261 IPR013083 -
Tsu08g00732 528 SUPERFAMILY RING/U-box 492 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00732 Tsu-Chr8 7763031 7764692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00732 286 528 C3H Transcription Factor Family AT2G19610 24.903 3.74e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00732 K11975 - fve:101297294 384.8