Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00730 ATGTGTGGTGGTGCTATTATTTCCGACTTCATTCCAGCTGCGGCGGCGGTGGGTGGTTCCCGCCGTGTCACTGCTGATATCTTATGGCCTAATTTGAGGAAAAATGGTTCGAAGAAATCATCGTTTTTGCTTGACGATGATTTTGAAGCTGGTTTCAGAGAGTTTAAGGATGATTCTGATTTCGATGAAGACGAGGATGAAGATGACGATGAAGGGTTGTTGGTCGGTATCAAAGGTTTTACCTTTGCTGCTTCTAACAAGAAATCTTCAAGGAACTTTTCTCGTGGCTCGGCTGCTGCAAAATCTGTGGCATCAAAATCAAATGAGCAAGCTGAAAAGGAATCAAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTTTGGCTCGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCCGAGGAGGCTCCAAATGCTTCTTCAAAACGTCTGAAGACTAATCCTGATAACCAGCTGTTGAACAAAAATCTGAACTCTTCCAAGCCAAACGGAAACAACAAAATGTTCAACTTTGGCGCGAATATGGAGAACTACTATTCTCCTATGGATCAGGTTGAACAGAAACCATTGGTTAACAACCAATATGCTGCTGCTGACATCGGAGCTTTCGCCGGAAACGGAGCTCAGCTTACTCCTGCTGATGTTAATGCTTATTTCAGTTCTGAGCATTCAAGCAACTCGTTTGATTATTCTGATTTATGTTGGGGCGAACAAGGCCCGAAAACACCTGAGATTTCCTCGGTGTTTTCAGCTCCTGCTCCTCTTGAAGCTGAACCTCAGATGAACATGCAGTCTAACAACTCTCAGGATATGCTACCAATGCAAGCTGAATCTGCAAAGACACTCTCTGAGGAGCTCGCAGATATCGAATCTCAGCTGAAGTTCTTCGAGAACTCATTTGATGATAACTGGAGTGATGCTTCACTTGCGTCATTACTCGGTGCTGATGTAACTCAGGATGCTGGAAACACAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATCGCAGGCGGAGTTTTCTAA 1164 0.451 MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRKNGSKKSSFLLDDDFEAGFREFKDDSDFDEDEDEDDDEGLLVGIKGFTFAASNKKSSRNFSRGSAAAKSVASKSNEQAEKESKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPNASSKRLKTNPDNQLLNKNLNSSKPNGNNKMFNFGANMENYYSPMDQVEQKPLVNNQYAAADIGAFAGNGAQLTPADVNAYFSSEHSSNSFDYSDLCWGEQGPKTPEISSVFSAPAPLEAEPQMNMQSNNSQDMLPMQAESAKTLSEELADIESQLKFFENSFDDNWSDASLASLLGADVTQDAGNTMNLWSFDDLPSIAGGVF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00730 387 MobiDBLite consensus disorder prediction 91 126 - -
Tsu08g00730 387 CDD AP2 122 180 IPR001471 GO:0003700|GO:0006355
Tsu08g00730 387 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Tsu08g00730 387 MobiDBLite consensus disorder prediction 180 211 - -
Tsu08g00730 387 PANTHER DNA-BINDING DOMAIN 1 381 IPR044808 GO:0003700|GO:0009873
Tsu08g00730 387 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Tsu08g00730 387 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Tsu08g00730 387 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Tsu08g00730 387 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Tsu08g00730 387 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Tsu08g00730 387 MobiDBLite consensus disorder prediction 186 211 - -
Tsu08g00730 387 Coils Coil 325 345 - -
Tsu08g00730 387 MobiDBLite consensus disorder prediction 91 106 - -
Tsu08g00730 387 PANTHER EREBP TRANSCRIPTION FACTOR 1 381 - -
Tsu08g00730 387 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00730 Tsu-Chr8 7723841 7727407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00730 1 387 AP2-EREBP Transcription Factor Family AT3G14230 42.579 1.12e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g00730 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00730 K09286 - gmx:100818646 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00730 08 7723841 7727407 Tsu08g00730 08 7723841 7727407 ECH
Tsu08g00730 08 7723841 7727407 Tsu08g00730 08 7723841 7727407 PCT