LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00730	ATGTGTGGTGGTGCTATTATTTCCGACTTCATTCCAGCTGCGGCGGCGGTGGGTGGTTCCCGCCGTGTCACTGCTGATATCTTATGGCCTAATTTGAGGAAAAATGGTTCGAAGAAATCATCGTTTTTGCTTGACGATGATTTTGAAGCTGGTTTCAGAGAGTTTAAGGATGATTCTGATTTCGATGAAGACGAGGATGAAGATGACGATGAAGGGTTGTTGGTCGGTATCAAAGGTTTTACCTTTGCTGCTTCTAACAAGAAATCTTCAAGGAACTTTTCTCGTGGCTCGGCTGCTGCAAAATCTGTGGCATCAAAATCAAATGAGCAAGCTGAAAAGGAATCAAAGAGAAAGAGGAAGAATCAGTATAGGGGTATCCGTCAACGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGGAAAGGAGTCCGTGTTTGGCTCGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGAATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCCGAGGAGGCTCCAAATGCTTCTTCAAAACGTCTGAAGACTAATCCTGATAACCAGCTGTTGAACAAAAATCTGAACTCTTCCAAGCCAAACGGAAACAACAAAATGTTCAACTTTGGCGCGAATATGGAGAACTACTATTCTCCTATGGATCAGGTTGAACAGAAACCATTGGTTAACAACCAATATGCTGCTGCTGACATCGGAGCTTTCGCCGGAAACGGAGCTCAGCTTACTCCTGCTGATGTTAATGCTTATTTCAGTTCTGAGCATTCAAGCAACTCGTTTGATTATTCTGATTTATGTTGGGGCGAACAAGGCCCGAAAACACCTGAGATTTCCTCGGTGTTTTCAGCTCCTGCTCCTCTTGAAGCTGAACCTCAGATGAACATGCAGTCTAACAACTCTCAGGATATGCTACCAATGCAAGCTGAATCTGCAAAGACACTCTCTGAGGAGCTCGCAGATATCGAATCTCAGCTGAAGTTCTTCGAGAACTCATTTGATGATAACTGGAGTGATGCTTCACTTGCGTCATTACTCGGTGCTGATGTAACTCAGGATGCTGGAAACACAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATCGCAGGCGGAGTTTTCTAA	1164	0.451	MCGGAIISDFIPAAAAVGGSRRVTADILWPNLRKNGSKKSSFLLDDDFEAGFREFKDDSDFDEDEDEDDDEGLLVGIKGFTFAASNKKSSRNFSRGSAAAKSVASKSNEQAEKESKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPNASSKRLKTNPDNQLLNKNLNSSKPNGNNKMFNFGANMENYYSPMDQVEQKPLVNNQYAAADIGAFAGNGAQLTPADVNAYFSSEHSSNSFDYSDLCWGEQGPKTPEISSVFSAPAPLEAEPQMNMQSNNSQDMLPMQAESAKTLSEELADIESQLKFFENSFDDNWSDASLASLLGADVTQDAGNTMNLWSFDDLPSIAGGVF	387

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu08g00730	387	MobiDBLite	consensus disorder prediction	91	126	-	-
Tsu08g00730	387	CDD	AP2	122	180	IPR001471	GO:0003700\|GO:0006355
Tsu08g00730	387	SMART	rav1_2	122	185	IPR001471	GO:0003700\|GO:0006355
Tsu08g00730	387	MobiDBLite	consensus disorder prediction	180	211	-	-
Tsu08g00730	387	PANTHER	DNA-BINDING DOMAIN	1	381	IPR044808	GO:0003700\|GO:0009873
Tsu08g00730	387	Gene3D	AP2/ERF domain	121	180	IPR036955	GO:0003700\|GO:0006355
Tsu08g00730	387	Pfam	AP2 domain	122	171	IPR001471	GO:0003700\|GO:0006355
Tsu08g00730	387	PRINTS	Ethylene responsive element binding protein signature	123	134	IPR001471	GO:0003700\|GO:0006355
Tsu08g00730	387	PRINTS	Ethylene responsive element binding protein signature	145	161	IPR001471	GO:0003700\|GO:0006355
Tsu08g00730	387	ProSiteProfiles	AP2/ERF domain profile.	122	179	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00730	Tsu-Chr8	7723841	7727407	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00730	1	387	AP2-EREBP Transcription Factor Family	AT3G14230	42.579	1.12e-68	219

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Tsu08g00730		AP2	2e-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00730	K09286		-	gmx:100818646	437.958

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu08g00730	08	7723841	7727407	Tsu08g00730	08	7723841	7727407	ECH
	Tsu08g00730	08	7723841	7727407	Tsu08g00730	08	7723841	7727407	PCT

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