Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00714 ATGGCTAGTAATGAAGGAAACAAAAGCAATGATTTCTATGCAGTTTTGGGATTGAACAAAGAATGCACTGATTCAGATTTAAGGAATGCTTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCTTCAGGGAATATGAAGTTTGTGGAAGAAGCAAAGAAGAAATTTCAGGCAATTCAAGAAGCCTATTCTGTTCTATCTGACGCGAATAAGAGGTTAATGTACGACGTTGGAGTTTACGACAGTGATGACGACGAAAATGGTATGGGAGACTTTTTGAATgaaatggttacaatgatgagcCAAACTAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTCGAAGATATGTTTCAAGCGGATATTGGATTAAATGGAAGCACTTCTCTTAATGCCTCTGGTTGCTCGACTTCATCGACTTTCATGACGTATAGTGAAAGTTCTAATTCTAATAAACGCAATTCCACTCAAATGAATTATGGAAAAGCAGAGGGTTCTTCTAGCTTTGATGCCAATTACCAGAACTTTTGTTTTGGGacaGGCGAAGCACCTTCAAGAAGATGTGGAGAAGGAAAAAGGGGGAATTCAAGAAGGAAGAGGTAG 630 0.3746 MASNEGNKSNDFYAVLGLNKECTDSDLRNAYKKLALKWHPDRCSASGNMKFVEEAKKKFQAIQEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLNEMVTMMSQTKSNENGEESFEELQQLFEDMFQADIGLNGSTSLNASGCSTSSTFMTYSESSNSNKRNSTQMNYGKAEGSSSFDANYQNFCFGTGEAPSRRCGEGKRGNSRRKR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00714 209 PRINTS DnaJ domain signature 54 74 IPR001623 -
Tsu08g00714 209 PRINTS DnaJ domain signature 13 31 IPR001623 -
Tsu08g00714 209 PRINTS DnaJ domain signature 31 46 IPR001623 -
Tsu08g00714 209 PRINTS DnaJ domain signature 74 93 IPR001623 -
Tsu08g00714 209 Pfam DnaJ domain 11 79 IPR001623 -
Tsu08g00714 209 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 207 - -
Tsu08g00714 209 MobiDBLite consensus disorder prediction 188 209 - -
Tsu08g00714 209 PANTHER PUTATIVE, EXPRESSED-RELATED 6 207 - -
Tsu08g00714 209 MobiDBLite consensus disorder prediction 153 175 - -
Tsu08g00714 209 Gene3D DnaJ domain 8 137 IPR036869 -
Tsu08g00714 209 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Tsu08g00714 209 SMART dnaj_3 10 74 IPR001623 -
Tsu08g00714 209 CDD DnaJ 11 71 IPR001623 -
Tsu08g00714 209 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Tsu08g00714 209 ProSiteProfiles dnaJ domain profile. 11 82 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00714 Tsu-Chr8 7597829 7604101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00714 1 79 C2H2 Transcription Factor Family AT1G74250 37.975 1.85e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00714 - - lja:Lj3g3v2576120.1 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00714 08 7597829 7604101 Tsu08g00714 08 7597829 7604101 ECH