Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00708 ATGGCTGATTCTTCGTTTGAGATAGACAATCCGAGACGACACTATCCAACTCCAGTGAGTTATCAGAGTGTATCCGGATCTAGTTCCTTCATACATTCCACTTCTCGAAGCAATGCAACTCCAAGAACTAGAAGAACTCGTCGCAACAGAATTCCATCCACACCCTTTGCTTCAGACGATGACCGTTCATGGCAAGGAGAAGTTTCATGGAAGTTTGAGCCAACTGGGTTGCGCGAACATAGTACAAACTTCGGTTCCATTCTTAGTCCATGGCCAACCAACTCCGCCTCCGATCGTAGCCATGTGTTTCGCCAATCGGCTAATGACTATTACCTTTCGAGAATAGGCGGTTTACGAGACATTACAAACTCACCACATGATCATTCTTCCTATGGAAGAGTTGAACTTAGGAGCCATGTTGCTAGGGCCAACAATGATCATAGTTACTTTGATCAATATAGTGGATTCTCTAAATTAGGAATCATCAAAGAAGGAGTTAGTAGTGGAAGTCATAACATTAAAAATAAGACTAGTCCATTAGCCGAGGAAGACGAACTTAGTGCGATCGATTATAGTATAACAGATGAACATGTTATGTCACCTTATGGGAATGATAATCATTTTCTTGATGAATTGTCATATGTTAAACATGATCATAAAGTACCATCATATGGTAACAAATCCCCTAGCCAAATttatggtggtggtggttatAGTCACTATGAGAGTAAAATGGCATCAGGATTTGATGATGAAGGTGATGAGGATATagatgaggatgatgaagatGTTGTAGGTCCTCCAAAGACAGTTGGATTGTTTAGCTTGTTTAGGTATACAAGAAAGTGGGATTGGTTACTTGTGTTTTTTGGTTGTTTAGGGGCTCTTATAAATGGAGGATCACTTCCTTTTTATTCTTATCTTTTTGGTAACTTGGTTAATAAGCTTTCAAGAGAAGCAAAAGATAACAAATCTCAGCTGTTGATTGATGTAGACCAGATATGTGTATTTATGACTGGCTTAGCTGCAGTTGTGGTAGTTGGAGCATATATGGAGATTACATGTTGGAGGTTAGTAGGGGAGAGATCTGCTCAAAGAATAAGAACTGAGTATCTAAGAGCAATCCTTAGACAAGACATAACTTTTTTTGATACAGAAATTAATACTGGTGATATTATGCATGGTATTGCTAGTGATGTTGCACAAATTCAAGAAGTTATGGGAGAGAAGATGGCTCACTTCATTCATCATATATTTACATTCATATGTGGATATGCAGTTGGGTTTAGAAGATCATGGCAAGTTTCATTGGTTGTTTTCTCAGTCACCCCATTAACAATGTTTTGTGGTATGGCTTACAAAGCACTTTATGGTGGTCTAGCAGCAAAAGAAGAAGCTTCTTATAGGAAAGCTGGAAGCATTGCTGAGCAGGCAATAAGTTCAATTAGGACAGTATTTTCATTTGTAGCTGAAAGCCAATTGGTTGAAAAATATTCTGATCTACTTCAAAAATCAGCTCCAGTTGGAGCTAAACTTGGTTTTGCTAAAGGTGCAGGAATGGGTGTTATATACTTAGTAACTTATTCAACATGGGCTTTGGCTTTTTGGTATGGTTCTATCTTAATTTCTAAGGGTAAACTTGATGGTGGATCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGTGGAAGAGGCTTGGCACTAGCACTTTCATATTTTGCACAATTTGCACAAGGTACTGTTGCAGCAACCCGTGTATTCTATGTTATAGAGAGAATTCCTGAGATTGATCCTTATAATCCTGAGGGTAGGAAACTTTCATCTGTTCGTGGAAGAATTGAATTAAAGAATGTTAGTTTCGCATATCCATCTCGTCCTGATTCACTTATACTTAACTCCATAAACTTGGTATTTCCATCTTCAAAAACTTTGGCATTGGTTGGTGCAAGTGGAGGTGGAAAATCAACTATCTTTGCTCTCATAGAAAGGTTTTATGACCCTATAGAAGGGATTATTACTTTAGATGGTCATGATTTAAGGACACTTCAAGTGAAGTGGTTAAGGGATCAAATTGGGATGGTTGGTCAAGAGCCAATTCTGTTTGCTACATCTATACTGGAAAATGTGATGATGGGGAAAGATAATGCTACAAAGGAAGAGGCAATTTCTGCTTGTATTGCCGCTGATGCGCACAATTTCATATCTAAGTTGCCACTGCGCTACGACACTCAGGCTGGTGATAGAGGTACGAAACTTTCGGGAGGTCAAAAGCAAAGAATTGCTTTGGCTAGAGCAATGataaaaaatcctaaaatcctTATTTTAGATGAACCAACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCAGTCCAAAGGGCCATTGACAAGATTTCTGCAGGCAGGACAACCATTGTCATTGCTCATAGGATAGCAACAGTGAAGAATGCTGATGCTATTGTAGTACTTGAACACGGTTCTGTCGCCGAGATTGGTGACCATCGCCAGCTTATGGCGAAAACCGGAGCTTACTACAACCTTGTCAAGCTTGCAACTGAATCCATTTCAAAACCCCTTCCATTAGAAACCGGCATGCAAAAAACCAATGATTTGTCGTccattaataataaatatgctCCTGATATAGCAAAATCAAGTTATCTAGTCGATATCGATTCAATGCAGGATGAGGAACAAGAAGATATTGAAGATAAACAACATAAAAAGCAAAGAAATTATAGACTTTCTGAGGTATGGAAATTGCAAAAGCCAGAGTTTATGATGCTAATTTCAGGCCTTGTTTTAGGCATGTTTGCTGGTGCTGTTCTGTCCCTTTTTCCATTAGTTTTAGGAATATCCCTTGGAGTATATTTTGGCGACGACACTTCAAAAATGAAAAGAGAAGTAGGGCACCTTTGTTTAGTACTTGTCGGCCTTGGATTCGGTTGCATCGTTTCTATGACAGGACAACAAGGTTTATGTGGTTGGGCAGGTTCAAAGCTAACACTTAGGGTTAGAAACCTCTTGTTTCAATCCATATTGAGACAAGAACCTGGatggtttgattttgatgaaaacTCCACCGGTGTATTGGTGTCAATGCTCTCAAGAGACTCTGTCAGTTTTCGTTCGGTACTCGGCGACAGATTCTCAGTACTTCTTATGGGATTGAGTTCAGCCGCTGTTGGACTCGGCGTGTCCTTTGCCTTTAATGTGAAACTAACCCTTGTTGCAGCTGCTGTAACACCTTTAGCCCTTGGTGCAAGTTACATAAACTTGATCATAAACATTGGTCCGAAAATCAATAACGATTCTTATGCAAGAGCTAGCAATATTGCTTCTGGCGCAGTTTCAAATATAAGAACAGTTGCTACATTTTCTGCTCAGGATCAGATAGTTAAATCCTTTGATAATGCCTTATCAGAACCtagaaaaaaatcattaaaaagtTCACAGATTCAAGGTCTTGTATTTGGACTATTCCAAGGTGCTATGTATGCAGCATACACCTTAACTCTTTGGTTTGGTGCATACCTTGTAAAACATAACCAAGGAAAATTTGAAGATGTTTATAagatttttctcattcttgttTTGAGTTCATTTTCTGTTGGTCAACTAGCTGGTTTAGCACCTGATACTTCTATGGCTGCAACATCAATTCCTGCAGTTCAAGATGTTATAAACAGAAGGCCATTGATAGGAAATGATGGAAGAAAAACTAGGAAAGTTGATAGATCAAAGGCTTTTCAAATAGAATTCAAAATGGTGACATTTGCATATCCATCAAGGCCTGAGATAACTGTGTTGAGGAATTTCTGTTTGAAGGTTAAAGGTGGAAGTACAGTGGCTTTGGTAGGACCAAGTGGATCAGGAAAATCGACAGTTGTGTGGTTGACACAGAGATTCTATGATCCTGATCAAGGAAATGTTATGATGAGTGGTGTAGACTTGAGGGAGATTGATGTGAAATGGTTGAGGAGACAAATTGGTTTGGTTGGTCAAGAGCCTGCACTTTTTGCTGGGAGCATAagggaaaatattgcttttggAGACCAAAGTGCTTCTTGGGCTGAAATTGAAGCTGCTGCAACGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAGGGTTATGAAACTCAGGTTGGTGAAAGTGGAGTCCAATTATCAGGTGGACAAAAACAAAGGATAGCTATAGCAAGGGCCAtattgaagaaatcaaaagtGCTTCTACTTGATGAAGCAAGCAGTGCATTGGACTTAGAATCAGAAAAACACATCCAAGAAGCTCTTAAGAATGTTTCCAAAGAAGCAACAACTATAATAGTTGCACATCGTCTTTCGACAATAAGAGAAGCTGATAAAATTGCAGTTATGAGAAATGGAGAAGTAGTTGAGTATGGTAGCCATGACACTCTTATTTCTTCAAATCAAAATGGTTTGTATGCTAGCCTTGTTAGAGCTGAGACTGAAGCCAATGCATTTGCTTGA 4494 0.381 MADSSFEIDNPRRHYPTPVSYQSVSGSSSFIHSTSRSNATPRTRRTRRNRIPSTPFASDDDRSWQGEVSWKFEPTGLREHSTNFGSILSPWPTNSASDRSHVFRQSANDYYLSRIGGLRDITNSPHDHSSYGRVELRSHVARANNDHSYFDQYSGFSKLGIIKEGVSSGSHNIKNKTSPLAEEDELSAIDYSITDEHVMSPYGNDNHFLDELSYVKHDHKVPSYGNKSPSQIYGGGGYSHYESKMASGFDDEGDEDIDEDDEDVVGPPKTVGLFSLFRYTRKWDWLLVFFGCLGALINGGSLPFYSYLFGNLVNKLSREAKDNKSQLLIDVDQICVFMTGLAAVVVVGAYMEITCWRLVGERSAQRIRTEYLRAILRQDITFFDTEINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYAVGFRRSWQVSLVVFSVTPLTMFCGMAYKALYGGLAAKEEASYRKAGSIAEQAISSIRTVFSFVAESQLVEKYSDLLQKSAPVGAKLGFAKGAGMGVIYLVTYSTWALAFWYGSILISKGKLDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAATRVFYVIERIPEIDPYNPEGRKLSSVRGRIELKNVSFAYPSRPDSLILNSINLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKDNATKEEAISACIAADAHNFISKLPLRYDTQAGDRGTKLSGGQKQRIALARAMIKNPKILILDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNADAIVVLEHGSVAEIGDHRQLMAKTGAYYNLVKLATESISKPLPLETGMQKTNDLSSINNKYAPDIAKSSYLVDIDSMQDEEQEDIEDKQHKKQRNYRLSEVWKLQKPEFMMLISGLVLGMFAGAVLSLFPLVLGISLGVYFGDDTSKMKREVGHLCLVLVGLGFGCIVSMTGQQGLCGWAGSKLTLRVRNLLFQSILRQEPGWFDFDENSTGVLVSMLSRDSVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNVKLTLVAAAVTPLALGASYINLIINIGPKINNDSYARASNIASGAVSNIRTVATFSAQDQIVKSFDNALSEPRKKSLKSSQIQGLVFGLFQGAMYAAYTLTLWFGAYLVKHNQGKFEDVYKIFLILVLSSFSVGQLAGLAPDTSMAATSIPAVQDVINRRPLIGNDGRKTRKVDRSKAFQIEFKMVTFAYPSRPEITVLRNFCLKVKGGSTVALVGPSGSGKSTVVWLTQRFYDPDQGNVMMSGVDLREIDVKWLRRQIGLVGQEPALFAGSIRENIAFGDQSASWAEIEAAATEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQEALKNVSKEATTIIVAHRLSTIREADKIAVMRNGEVVEYGSHDTLISSNQNGLYASLVRAETEANAFA 1497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00708 1497 SUPERFAMILY ABC transporter transmembrane region 917 1231 IPR036640 GO:0005524|GO:0016021
Tsu08g00708 1497 MobiDBLite consensus disorder prediction 1 62 - -
Tsu08g00708 1497 PANTHER ABC TRANSPORTER B FAMILY 100 1496 - -
Tsu08g00708 1497 MobiDBLite consensus disorder prediction 16 40 - -
Tsu08g00708 1497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 289 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00708 1497 Pfam ABC transporter 631 780 IPR003439 GO:0005524
Tsu08g00708 1497 Pfam ABC transporter transmembrane region 288 560 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00708 1497 Pfam ABC transporter transmembrane region 929 1199 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00708 1497 Gene3D ABC transporter type 1, transmembrane domain 275 1216 IPR036640 GO:0005524|GO:0016021
Tsu08g00708 1497 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1215 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu08g00708 1497 Pfam ABC transporter 1269 1417 IPR003439 GO:0005524
Tsu08g00708 1497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1251 1487 IPR003439 GO:0005524
Tsu08g00708 1497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 849 IPR027417 -
Tsu08g00708 1497 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 613 849 IPR003439 GO:0005524
Tsu08g00708 1497 ProSitePatterns ABC transporters family signature. 752 766 IPR017871 GO:0005524
Tsu08g00708 1497 ProSitePatterns ABC transporters family signature. 1390 1404 IPR017871 GO:0005524
Tsu08g00708 1497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1248 1488 IPR027417 -
Tsu08g00708 1497 Gene3D ABC transporter type 1, transmembrane domain 1217 1493 IPR036640 GO:0005524|GO:0016021
Tsu08g00708 1497 SMART AAA_5 1278 1464 IPR003593 -
Tsu08g00708 1497 SMART AAA_5 640 826 IPR003593 -
Tsu08g00708 1497 Gene3D - 1240 1491 IPR027417 -
Tsu08g00708 1497 Gene3D - 603 851 IPR027417 -
Tsu08g00708 1497 CDD ABC_6TM_Pgp_ABCB1_D1_like 289 586 - -
Tsu08g00708 1497 PANTHER - 100 1496 - -
Tsu08g00708 1497 CDD ABC_MTABC3_MDL1_MDL2 1251 1489 - -
Tsu08g00708 1497 SUPERFAMILY ABC transporter transmembrane region 275 598 IPR036640 GO:0005524|GO:0016021
Tsu08g00708 1497 CDD ABC_MTABC3_MDL1_MDL2 613 850 - -
Tsu08g00708 1497 CDD ABC_6TM_Pgp_ABCB1_D2_like 918 1233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00708 Tsu-Chr8 7550275 7558698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00708 901 1497 Calmodulin-binding Proteins AT2G36910 36.650 8.90e-107 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00708 K05658 - gmx:100816700 2248.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00708 08 7550275 7558698 Tsu08g00708 08 7550275 7558698 ECH