Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00703 ATGGCGACCAAAGAAGATTCATTGATGGAGTTACACGAAATCATAATCGAAAGTGAAGGATCAAACTCAAATTCAGAATGGGACGATTCAGAAGAAGATCCTGATTATGATGACATGCTGGAAGAAACTCATCGTAGCTTCTCCAATCTCTCACTCAAAAACAAGTCAAAAAAGCGCATAGTTGAAAATAAGGGTATGGATAGTGCGATGAACTCAGAAGTGTTGGAGATGAATACACCTTCTGTTGATGGTGATAGTTTTGATAAAGttcagaaaataataaaggCTGGACGGCTAGAGAAATTGAAAGTGGATGAatgcaaaatttatttgaagaaGAATGGTCTGAGGCTAACTGGGAATAAGGACACACTTATCCAGCGTATAAAGGAGCATCAAGAGATTATAAATGGTGGAGGGGAGAAAAAGTATCCGCCTCATAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACCGgtgatgttgttttgtttgagcAAAACGTTTATGAAATGTTCAACATAGCATCCAGGAGTGGCGGCGGTCCACCATGTGGCAAAAGGACTGTTGCAGGCCGCATAGTGAAAGAAAGTTATGGTGCTGCCAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGCAAGGGAGAAAAGCCTCTCCCTCCCCTTCACCCTCTACTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGCAAAGGCAAAAACTGTTAATGGAAAAGCACTCTCGGGGATCCATTGCTAGGGCAGATAGGGAAGCAAGAATACAGGAAAAGGAGATGAGAAAATCAATGAAGGAAAATAGGATCTCAAAAAAGGATTCGGCAAAGAACCAATGTCAATCACATTCATCTATTGCAAGGCCACAAAATCAACCTCAAGAAACAACAAATGTATTCATTACTCATACATCTGCAACTGTAAATAAACCAGCAGCTGGAACTGAACAGCACGTTCGGTCTATTGATTCTCGAGCTGTCACAATGGGATTTGACCAGTTCCGTAATGCCGGAAAATCGTCTTTTAATTCAAACCACTATTATGCCGACTACAATTACAGAGACAAACCAACCACTGTTGAGAGATACCATCCTTCCATTGTTGAGACAAACAATTTTGCAGAGAGAACTTCTTATCCAAGGAAGCCTTTGTCAAGTGCAAATCACTTTGTTCCGCGTTTCGCAAATGCAAATCACATGCATACAGTGATCCCAAACAGAGAAAGCTATCAGCAAAAACAGTTTTGTAGACATTTTGCGCGTGGAAGATGCCATTTCGGAGATAACTGCAAATTCTTACATGGTGGGAAAGACTAA 1365 0.3963 MATKEDSLMELHEIIIESEGSNSNSEWDDSEEDPDYDDMLEETHRSFSNLSLKNKSKKRIVENKGMDSAMNSEVLEMNTPSVDGDSFDKVQKIIKAGRLEKLKVDECKIYLKKNGLRLTGNKDTLIQRIKEHQEIINGGGEKKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSGGGPPCGKRTVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWEDEGQRQKLLMEKHSRGSIARADREARIQEKEMRKSMKENRISKKDSAKNQCQSHSSIARPQNQPQETTNVFITHTSATVNKPAAGTEQHVRSIDSRAVTMGFDQFRNAGKSSFNSNHYYADYNYRDKPTTVERYHPSIVETNNFAERTSYPRKPLSSANHFVPRFANANHMHTVIPNRESYQQKQFCRHFARGRCHFGDNCKFLHGGKD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00703 454 MobiDBLite consensus disorder prediction 278 292 - -
Tsu08g00703 454 ProSiteProfiles SAP motif profile. 99 133 IPR003034 -
Tsu08g00703 454 MobiDBLite consensus disorder prediction 293 309 - -
Tsu08g00703 454 Coils Coil 263 283 - -
Tsu08g00703 454 MobiDBLite consensus disorder prediction 278 309 - -
Tsu08g00703 454 SUPERFAMILY SAP domain 88 133 IPR036361 -
Tsu08g00703 454 ProSiteProfiles Zinc finger C3H1-type profile. 426 453 IPR000571 GO:0046872
Tsu08g00703 454 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 1 451 - -
Tsu08g00703 454 SUPERFAMILY CCCH zinc finger 427 451 IPR036855 GO:0046872
Tsu08g00703 454 SMART c3hfinal6 427 452 IPR000571 GO:0046872
Tsu08g00703 454 Gene3D SAP domain 89 145 IPR036361 -
Tsu08g00703 454 Pfam SAP domain 99 132 IPR003034 -
Tsu08g00703 454 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 1 451 IPR045124 GO:0003723|GO:0045892
Tsu08g00703 454 MobiDBLite consensus disorder prediction 15 37 - -
Tsu08g00703 454 Pfam CCCH-type zinc finger 432 451 IPR041367 -
Tsu08g00703 454 Gene3D - 417 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00703 Tsu-Chr8 7522638 7526026 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu08g00703 SAP 1.2e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00703 - - gmx:100815642 509.99