Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00696 ATGCCAACGAGATTATTGCCCCCTGTCAAGAGCTTTGACAGCGAGCAAAATATTAGGCATTGTCCTATTTGCATGGAAGAATTCAAGAGAGGAGACTTGTTTCAACCATTTGGAGTCTGCGGTCATGAATTCCATCGTGGTTGTCTCAATTCTTGGTTGCAGAGAGGAAAGTCTACTTGCCCAGTTTGTCACCTAGACTTGAGGAGGGCAGAGATTGAGACATGGGCAAACATTGCTGGTATGGCAATGAAATTATTGCCCCCTGTCAAGAGCTTTGATAATGAGGAAAATATTAGGCATTGTCCTATTTGCATGGAAGTATTCAAGAGAGGAGACTTGATTCAACCATCTGGAGTCTGCGATCATGAATTCCATCATGGTTGTCTCAATTCTTGGCTGCAGAGAGGAAAGTCTACTTGCCCAGTTTGTCGCCTAGACTTGGTTGTCTAA 450 0.4378 MPTRLLPPVKSFDSEQNIRHCPICMEEFKRGDLFQPFGVCGHEFHRGCLNSWLQRGKSTCPVCHLDLRRAEIETWANIAGMAMKLLPPVKSFDNEENIRHCPICMEVFKRGDLIQPSGVCDHEFHHGCLNSWLQRGKSTCPVCRLDLVV 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00696 149 SMART ring_2 21 63 IPR001841 -
Tsu08g00696 149 SMART ring_2 101 143 IPR001841 -
Tsu08g00696 149 CDD RING-H2 101 144 - -
Tsu08g00696 149 ProSiteProfiles Zinc finger RING-type profile. 21 64 IPR001841 -
Tsu08g00696 149 PANTHER OS06G0666500 PROTEIN 83 146 - -
Tsu08g00696 149 PANTHER OS06G0666500 PROTEIN 14 69 - -
Tsu08g00696 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 148 IPR013083 -
Tsu08g00696 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 73 IPR013083 -
Tsu08g00696 149 CDD RING-H2 21 63 - -
Tsu08g00696 149 Pfam Ring finger domain 100 144 IPR001841 -
Tsu08g00696 149 Pfam Ring finger domain 20 63 IPR001841 -
Tsu08g00696 149 ProSiteProfiles Zinc finger RING-type profile. 101 144 IPR001841 -
Tsu08g00696 149 SUPERFAMILY RING/U-box 18 68 - -
Tsu08g00696 149 SUPERFAMILY RING/U-box 94 147 - -
Tsu08g00696 149 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 69 - -
Tsu08g00696 149 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 83 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00696 Tsu-Chr8 7456525 7457663 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00696 11 63 C3H Transcription Factor Family AT2G15530 43.396 1.35e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00696 - K16281 mtr:MTR_4g073810 99.7525