Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00693 ATGCAGAATCATAGGCTCAAGCatcagcagcagcaacaacagcaacaacaacagcagcaaGCTCTGATGCAACAAGCTTTGATTCAACAGCAATCTCTCTATCATCCTGGTCTCTTAGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGTAACGTCCATACACAGGTAACCGAACCACTTCTGCAAGAAGTATTTGCAGCCAATGGCCCAGTTGAAGGGTGTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGGTTTATTCATTACTTCGACCGCAGATCTGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTGTTTGGACAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTTCAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACTGATGCTACTCTTTTTGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTCATGTGGGATCAGAAGACTGGTCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAGTCAGCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGCAGACAAATTCGCTGCAATTGGGCAACAAAAGGTGCTGGAGGCATGGAAGAGAAGCAAACCCCAGACAACAAAACTGTGGTGGAACTAACAAATGGTTCATCTGAGGACGGTAAAGAGACATCTAACAATGATGCTCCTGAGAATAATCCTCAATATACAACTGTTTATGTGGGTAACATTGGTTCAGAGGCAACACAGCTTGATCTCCATCGCCATTTCTATGCTCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTCGTGAGATATAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGAAATGCTCAGTCTTATCTCGGTGGCAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCGACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTGCTCTACCTCTGCCAGGTCTGTCCGCAACTGATATTTTAACGTACGAGCGGCAACTAGCAATGAGCAAGATGGGTGGTGTTCATGCTGCGTTGATGCATCCACAAGCGCAACATCCTCTTAAGCAGGCTGCAATTGGAGCAAGCCAGGCGATATATGACGGCGGATTCCAAAATGTTGCTGCTGCACAGCAAATGATGTACTATcagtaa 1284 0.4455 MQNHRLKHQQQQQQQQQQQQALMQQALIQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAANGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGMEEKQTPDNKTVVELTNGSSEDGKETSNNDAPENNPQYTTVYVGNIGSEATQLDLHRHFYALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLGGKQIKCSWGSKPTPPGTASNPLPPPAALPLPGLSATDILTYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00693 427 SUPERFAMILY RNA-binding domain, RBD 46 140 IPR035979 GO:0003676
Tsu08g00693 427 Coils Coil 1 21 - -
Tsu08g00693 427 SUPERFAMILY RNA-binding domain, RBD 258 350 IPR035979 GO:0003676
Tsu08g00693 427 CDD RRM3_TIA1_like 268 343 - -
Tsu08g00693 427 MobiDBLite consensus disorder prediction 225 265 - -
Tsu08g00693 427 Gene3D - 1 145 IPR012677 -
Tsu08g00693 427 CDD RRM1_TIA1_like 64 134 - -
Tsu08g00693 427 Gene3D - 146 226 IPR012677 -
Tsu08g00693 427 SUPERFAMILY RNA-binding domain, RBD 141 231 IPR035979 GO:0003676
Tsu08g00693 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 225 IPR000504 GO:0003723
Tsu08g00693 427 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 408 - -
Tsu08g00693 427 MobiDBLite consensus disorder prediction 239 265 - -
Tsu08g00693 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 136 IPR000504 GO:0003723
Tsu08g00693 427 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 343 IPR000504 GO:0003723
Tsu08g00693 427 Gene3D - 245 347 IPR012677 -
Tsu08g00693 427 SMART rrm1_1 63 132 IPR000504 GO:0003723
Tsu08g00693 427 SMART rrm1_1 269 339 IPR000504 GO:0003723
Tsu08g00693 427 SMART rrm1_1 148 221 IPR000504 GO:0003723
Tsu08g00693 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 336 IPR000504 GO:0003723
Tsu08g00693 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 219 IPR000504 GO:0003723
Tsu08g00693 427 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 130 IPR000504 GO:0003723
Tsu08g00693 427 CDD RRM2_PUB1 148 222 - -
Tsu08g00693 427 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 11 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00693 Tsu-Chr8 7443901 7449260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00693 145 336 Eukaryotic Initiation Factors Gene Family AT1G49760 27.179 4.10e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00693 K13201 - gmx:100781227 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00693 08 7443901 7449260 Tsu08g00693 08 7443901 7449260 ECH