Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00689 atgtctACTTTCCCAAATACTGTGTCTGATGGCCGGAAAGTCGCCGGAAAAGCACCGGAGAAGTTTAAATTTTCTCAGACTTGTAGTCTCTTTAGTCAATTCTTGAAGGAAAAGAGAATTTCTGGTGATTCTGCTTCTGGATTGTTTGGGAAAATGGATCCTAAAGgaaGTACAAAGGATTTGTTAGGAAATATGCAAAATTCAGATGGGGGTTTGAGACTAAATGCATCAACAATTGATTCTCTTCCTCAGCTTGTGGAAAATCCTTGTATTAAGAAGTCTAATATAAGaTCAACGGCACCAGAAACACCTCAATTGACATTATTCTATGCCGGAAAATTGTTAGTATTCGATGCTTTTTCGCCTGCAAAAGCAACCGAGATCATGGAATTGGCTACCAAGTTAGCCTCTGAAATTCCAAGCACCGAAGAAAATCCACCAAGTGCGCCTATTGCTAATGAAAAATCAAAGGAACCCAAAGTTCCTCAAACAAACACTGCCTTAGAAACACCTAAACAAGGAAACAAAACCAATTGCTCagATATGAGATATCCAAGAAGAGCTTCACTTCTTAAGTTCcttgagaaaagaaaagaaagGGTTGTTGCTAGAGGACCTTACCAAATAAACAATCACAAAGTTGAGGGTAGTAGTTCAGGAAGTGAACTTAAAGATCAACAAAGTTCTGAACACTTTGACCTTAACTTATAG 711 0.3685 MSTFPNTVSDGRKVAGKAPEKFKFSQTCSLFSQFLKEKRISGDSASGLFGKMDPKGSTKDLLGNMQNSDGGLRLNASTIDSLPQLVENPCIKKSNIRSTAPETPQLTLFYAGKLLVFDAFSPAKATEIMELATKLASEIPSTEENPPSAPIANEKSKEPKVPQTNTALETPKQGNKTNCSDMRYPRRASLLKFLEKRKERVVARGPYQINNHKVEGSSSGSELKDQQSSEHFDLNL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00689 236 SMART tify_2 99 134 IPR010399 -
Tsu08g00689 236 MobiDBLite consensus disorder prediction 202 236 - -
Tsu08g00689 236 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 229 IPR040390 -
Tsu08g00689 236 ProSiteProfiles Tify domain profile. 99 134 IPR010399 -
Tsu08g00689 236 MobiDBLite consensus disorder prediction 139 183 - -
Tsu08g00689 236 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 12 229 - -
Tsu08g00689 236 MobiDBLite consensus disorder prediction 158 182 - -
Tsu08g00689 236 Pfam tify domain 101 132 IPR010399 -
Tsu08g00689 236 Pfam Jas motif 186 208 IPR018467 -
Tsu08g00689 236 MobiDBLite consensus disorder prediction 211 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00689 Tsu-Chr8 7421188 7423883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00689 12 209 Tify Gene Family AT1G19180 34.375 1.22e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu08g00689 tify 5.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00689 K13464 - gmx:100815478 320.087