Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00672 ATGGCAGCAACTTGTTGGTGTATCACATTTGTGATCTTTGCCTTATTGATTCTGGTTTCATTTGTAACCCATCTAACCGGTAGATTAATATATCTAGCTTGTGTCGTCGGCCTGGCAATCCTGTTTTTGGCAATCAAGTTCTACAAAGCCGAAaccataacaaaaaataatgccAATGACTTCGAGTTGCCAGTGCTTTATTTGAGAAGAGGTGAAGACTCTGCCAGGAGGAGGGCGGAGATTGAGATTGGCACTTGGGCAATGGGATTACTGCCCCCTGCCAAGAGTGTTGAGAGTGATGAAGACATGAGGCAGTGTCCGATATGCATGGAGGAATACACGAGAGGAGAGTCGATTCAGACCTTTGGAGTTTGCGAACATGACTTCCATCGCAGTTGTCTCTGTTCTTGGTTGCAAAGGGGGAAATCTAGTTGCTCGGTTTGTCGTCTATATTTGTTCGTCTAA 465 0.4344 MAATCWCITFVIFALLILVSFVTHLTGRLIYLACVVGLAILFLAIKFYKAETITKNNANDFELPVLYLRRGEDSARRRAEIEIGTWAMGLLPPAKSVESDEDMRQCPICMEEYTRGESIQTFGVCEHDFHRSCLCSWLQRGKSSCSVCRLYLFV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00672 154 Pfam Ring finger domain 105 149 IPR001841 -
Tsu08g00672 154 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 26 150 - -
Tsu08g00672 154 SUPERFAMILY RING/U-box 100 152 - -
Tsu08g00672 154 SMART ring_2 106 148 IPR001841 -
Tsu08g00672 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 152 IPR013083 -
Tsu08g00672 154 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
Tsu08g00672 154 PANTHER OS06G0666500 PROTEIN 26 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00672 Tsu-Chr8 7206408 7206872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00672 105 153 C3H Transcription Factor Family AT5G47610 44.898 2.08e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00672 - K22378 pvu:PHAVU_006G208700g 73.9442