Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00671 ATGGCAGCAACTTGTTGGTGTATCACATTTGTGATCTTTGCCTTATTGATTCCGGTTTCATTTGTAACCCATCTAACCGGTAGATTAATATATCTGGCTTGTGTCGTCGGCCTGGCAATCCTGTTTTTGGCAATCAAGTTCTACAAAGCcgaaatcataacaaaaaataatgccAATGACTTTGAGTTGCCAGGGCTTTATTTGAGAAGAGGAGAAGACTCTGCCAGGAGGAGGACGGAGATTGAGATTGGCACTTGGGCAATGGGATTACTGCCCCCTGCCAAGAGTGTTGAGAGTGATGAAGACATGAGGCAGTGTCCGATTTGCATGGAGGAATACACGAGAGGAGAGTCGATTCAGACCTTTGGAGTTTGCGATCATGACTTCCATCGCAGTTGTCTCCATTCTTGGTTGCAGAGGGGGAAATCTAGTTGCTCGGTTTGTCGTCTAGATTTGTTCGTCTAA 465 0.4366 MAATCWCITFVIFALLIPVSFVTHLTGRLIYLACVVGLAILFLAIKFYKAEIITKNNANDFELPGLYLRRGEDSARRRTEIEIGTWAMGLLPPAKSVESDEDMRQCPICMEEYTRGESIQTFGVCDHDFHRSCLHSWLQRGKSSCSVCRLDLFV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00671 154 SUPERFAMILY RING/U-box 100 152 - -
Tsu08g00671 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 153 IPR013083 -
Tsu08g00671 154 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
Tsu08g00671 154 Pfam Ring finger domain 105 149 IPR001841 -
Tsu08g00671 154 PANTHER OS06G0666500 PROTEIN 28 151 - -
Tsu08g00671 154 SMART ring_2 106 148 IPR001841 -
Tsu08g00671 154 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 28 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00671 Tsu-Chr8 7204523 7204987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00671 105 153 C3H Transcription Factor Family AT5G47610 46.939 4.84e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00671 - K22378 pvu:PHAVU_006G208700g 75.8701