Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00636 ATGTTGAGTGCAAGTTCAAGAAATAGGTCCCCTTTCACACCAAATCAATGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACTGGAACACCTATTCCACCAGATCTCATTTACTCTATCAAAAGAAGTTTAGACACTTCAATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAATACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGtggaacaacaacaacaacaactagtAGTTTCTTCTACAAACACAACCTCTTTAACAAACACaacttcttcatcatcatcaccatctcCTTATACTAATAGAAACATCTccttgaacaacaacaacagtaacttaacttcttcttttcctttttctacTTCAATGACTTGTCATGATCagtcacaacaacaacaacaacagcaacaacccTTTTCACAATCTTACCAAAACTCTTCTCTAAACCCTTACTTTTACTCTCAACAATCAAACTCTTCTAAACCTCTTGATCATTCTGATTTTCAAACTCAAGATGCTACTACTCATCATCTCTTTTTGGACTCTTCATCTTATTCACATGATGATAAAGACTATAGGCAAGTTCATGGAATAAGGGATGGTGTAGATGAGAGAACTTTCTTTCCAGAAGCAACAGGGTCTTCTAGGAGCTATCATTATGGTTCATATAATCAACAACTATCAGTGAATCCTTTTAAGTCATATTCAAGTTCACAACAATTTCAGAACATCAATGATAACACAAGACAGCAAGAACAGCAGCAACAAGAACAACACTGTTTTGTGTTAGGCACTGACTTCAAATCAACAAGACCAATTACAAACAAGGACAAAGAAAGTGAGACAACTCAGAAACCACTTCATCATTTCTTTGGAGAGTGGACTCCAAAGAACACTGATTCTTGGCTAGATCTTGCTTCCAACTCCAGACTCCCAACAGATGAGTGA 1095 0.3333 MLSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQQQQQLVVSSTNTTSLTNTTSSSSSPSPYTNRNISLNNNNSNLTSSFPFSTSMTCHDQSQQQQQQQQPFSQSYQNSSLNPYFYSQQSNSSKPLDHSDFQTQDATTHHLFLDSSSYSHDDKDYRQVHGIRDGVDERTFFPEATGSSRSYHYGSYNQQLSVNPFKSYSSSQQFQNINDNTRQQEQQQQEQHCFVLGTDFKSTRPITNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRLPTDE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00636 364 MobiDBLite consensus disorder prediction 103 218 - -
Tsu08g00636 364 PANTHER - 1 363 IPR031137 GO:0005634|GO:0006351|GO:0032502
Tsu08g00636 364 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g00636 364 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g00636 364 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Tsu08g00636 364 MobiDBLite consensus disorder prediction 320 341 - -
Tsu08g00636 364 MobiDBLite consensus disorder prediction 320 335 - -
Tsu08g00636 364 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g00636 364 Pfam WRC 77 119 IPR014977 -
Tsu08g00636 364 MobiDBLite consensus disorder prediction 117 218 - -
Tsu08g00636 364 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00636 Tsu-Chr8 6909146 6911232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00636 3 342 GRF Transcription Factor Family AT3G13960 40.360 7.65e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tsu08g00636 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00636 - - vun:114166369 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00636 08 6909146 6911232 Tsu08g00636 08 6909146 6911232 ECH