Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00634 ATGAGTAACTGGTTAGGATTTTCTCTTACTCCACACTTGAGGATTGATGAAGAATTTGGTAgagaaaaccaaaatcaagaacATCATGGAGAAGGATCAGAAATAGGAAGAAACTATgttccttcttcttctcatcatcatcttcataatCACTTATCTGTTATGCCTCTGCGTTCTGATGGTTCACTCTGTGTTTCTGATACTTTTACTCACTCTGTTACACCTCAAGAATGGAGATATGAAAATGCAATAACTGATGGAAATTCAAATGAAGAAGGACCAaaacttgaagattttttgggttgttaccaaaatcaaaaccaaaatagtACTAATACTATTTCTAAAATCAATGTTAATGTAACACCAAGTTTTTgcactaataataataatagagagATTGAAACAGGAGAAAATCTAACAAACCAATCTTTGATTCACTCTTTTCATCATGGATATaatgataataacaataataatcatcatGGTTTAATTCATAGTAATAATATGTACAAATCATGGAtgagtcaaaatcaattttcttctgatggaaaaaattctagtgatGGAAATGGTTTTCAATCTCTTAATTTAACTATGAGTCCTAGTGTGCAAAATGGTGTTGGTATTGGTGGTGGTACAATTTCAACTGTTCAAGTGAATGAAGATCCTAGGAAAAGATCTTTGTCAAAATCTAATGCTGCTAGAGAACCTGTCCCAAGAAAATCTATTGATACTTTTGGACAAAGAACTTCTCAATATCGTGGTGTTACAAGGCATAGATGGACAGGGAGATATGAGGCACATTTGTGGGACAATAGTTGCAGAAAAGAAGGGCAAACAAGGAAAGGAAGACAAGTTTACCTTGgTGGTTATGATAAGGAAGAAAAAGCAGCAAAAGCTTATGACTTAGCTGCACTGAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTATAAGCACTTATGAGAAGGAACTTGAAGAAATGAAGCACATGACTAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAAAGCAGTGGATTTTCAAGAGGTGCATCTGTGTATAGAGGTGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTAGGATAGGAAGGGTTGCAGGAAATAAAGATTTATATCTTGGTACATTTAGCACACAAGAGGAGGCTGCAGAAGCATATGATATTGCAGCAATCAAATTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTCAAGAGAATTTGCTCAAGCTCAACTCTAATCACCGGTGATCTCGCTAAACGCTCTCCTAAAGAATCACCCGCTCCTCTTGCAGCCATAGCCGAGGACTTCAATTCGTGTGGAAGTTCATCGACACCTTCTCAGCCGCCACCTCTAGCTATTACCGATGGCGAACAACATTCTGATGAATTGTCCAACATGGTTTGGAATTCCAACACCGAGCAACCACCGCATAATGAGTGCGGAAACAACACCAACATCAATGAATCGTCACAACACGATTCACAAAGCAGCAAGAATGAGATGAACCCTCAAAGTCCCAAATTACCTAATGAGTTTGGAGTGAGTGGAGCTGATTATGGACATGGTTACTTCACATTGAATGAACCAAAATATGATGATGAAAGCAATGAAAATGACCACATGGACAATAATAGGCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCTATGTTTGCTTTgtggaatgaatga 1740 0.3414 MSNWLGFSLTPHLRIDEEFGRENQNQEHHGEGSEIGRNYVPSSSHHHLHNHLSVMPLRSDGSLCVSDTFTHSVTPQEWRYENAITDGNSNEEGPKLEDFLGCYQNQNQNSTNTISKINVNVTPSFCTNNNNREIETGENLTNQSLIHSFHHGYNDNNNNNHHGLIHSNNMYKSWMSQNQFSSDGKNSSDGNGFQSLNLTMSPSVQNGVGIGGGTISTVQVNEDPRKRSLSKSNAAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPISTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKESPAPLAAIAEDFNSCGSSSTPSQPPPLAITDGEQHSDELSNMVWNSNTEQPPHNECGNNTNINESSQHDSQSSKNEMNPQSPKLPNEFGVSGADYGHGYFTLNEPKYDDESNENDHMDNNRLGNLGLVNQVPMFALWNE 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00634 579 Pfam AP2 domain 253 311 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 Pfam AP2 domain 354 405 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 MobiDBLite consensus disorder prediction 177 223 - -
Tsu08g00634 579 MobiDBLite consensus disorder prediction 177 243 - -
Tsu08g00634 579 Gene3D AP2/ERF domain 355 415 IPR036955 GO:0003700|GO:0006355
Tsu08g00634 579 Gene3D AP2/ERF domain 252 321 IPR036955 GO:0003700|GO:0006355
Tsu08g00634 579 MobiDBLite consensus disorder prediction 452 556 - -
Tsu08g00634 579 SUPERFAMILY DNA-binding domain 354 415 IPR016177 GO:0003677
Tsu08g00634 579 MobiDBLite consensus disorder prediction 22 47 - -
Tsu08g00634 579 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 522 - -
Tsu08g00634 579 ProSiteProfiles AP2/ERF domain profile. 355 413 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 CDD AP2 354 415 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 3 522 - -
Tsu08g00634 579 ProSiteProfiles AP2/ERF domain profile. 253 319 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 SMART rav1_2 355 419 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 SMART rav1_2 253 325 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 PRINTS Ethylene responsive element binding protein signature 395 415 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 MobiDBLite consensus disorder prediction 452 525 - -
Tsu08g00634 579 CDD AP2 252 321 IPR001471 GO:0003700|GO:0006355
Tsu08g00634 579 SUPERFAMILY DNA-binding domain 252 321 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00634 Tsu-Chr8 6876105 6881203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00634 1 443 AP2-EREBP Transcription Factor Family AT1G72570 51.173 7.98e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tsu08g00634 AP2 7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00634 K09285 - gmx:100809762 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00634 08 6876105 6881203 Tsu08g00634 08 6876105 6881203 ECH