LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00621	ATGCGCACAACAGATTGGATATTAATGTGTTTAATGCTTATACTTAGTCTCTGGTATATGCCAGAATCAGTTGTTGAAGATCATCCATACAATAATGATCCTGAAATTCATGATCATCATCATAAGTATGATGTCTTTGTTAACTTTCGTGGTTCAGACATCCGCGATGGTTTTCTTGCTCATTTGGTTAAAGCTTTATCTGAAAAGAAAATTGTTACCTTCGTAGATTATGAACTCAAAAGAGGAGATGAAATATCAGCACTTTTTGATGCAATTGAAACATCATTGATATCTTTGGTCATATTCTCTCCAAACTATACTAATTCAGCTTGGTGTTTGGATGAGTTAGTCAAAATTGTTGAATGTAGAGAGATAAATGGACAGATTTTATTGCCTGTTTTCTACAAAGTGGACCCTACTATTGTGAGACATCAAAAGGGAAGTTATGGTAATATTGCAGTtgctgaaaaagaaaaaaggttcAGTTCAAGCAGGATGGAAGGGTGGAAATCTGCTTTGAGGAAATCTGCTGATATAAGTGGCTTTCCTTCCTCTGATTTTTCGGATGATGCTAAGCTTATTGAAGAAATAGTTAAAGATGTGTTGAAGAGGTTGGATCATGGCCATCTAGTTAATTCAAAAAGACTTGTTGGAATTGGAAAACAAATTTCACATGTGGAATCATTGTTACAAGCCGAGTCACAAGGTGTTCGCGCTATTGGAATATGGGGGATGAGTGGTATAGGCAAAACAACTATTGTAGAAGAAGTATATAGCAAGCTACGTTCTGGGTATGACGGTAGTCACTCCATTGTTGATGTCCGAGGTGAATGTAGAAAAAATGGAATAATGTATTTAAAGAAAGACAtgtattctaatctattaaagaAAGATTTGGATATCGACACACGAAGTGGATTACCCTCTTCTGTTGTGAGGATGCTTCGTCGTACGAAGGTTCTTGTTGTTCTTGATGGTGTCAATGATCTACAacaactaaattatttaattggaTCGACGCTTGATTGGTTTGGAAATGGAAGTAGAATAATCATAACAAGTGGAGACAAGCAAGTACTTGTCGAAAGAGGTGTTGATATATACGAGGTTAAGCCATTAGACTTTGATGACTCTCTTAGGCTTTTCAACATGCATGCCTTTGAACAAAATCATGCATATCTGGAAGAGTACTATGAGTTGTCGAAGATGATGGTGAAGCATGCCGCAGGAATTCCATCTGCTCTTGAACATTTGGGTCTTCGGCTTCGTGGAAAAGATAAAGAAGCATGGGAAAAGCAATTAGGGAGGCTTAAAAAAAGAGTTCCAATTAAAGAAGTTCATGAAATTTTTAAGTTGAGTTACAATGATCTTGATCATCACGAGAAGAAGATACTATTAGACATTGCATGTTTTTTTGATGGATTGCATCTCAAAAATGACGACATACAACTGTTGGTAAAAGATCGTGATTATTCATTGGCTGATGAGCTCGATAGTTTGATAAATAAAGCTCTTGTAACTATTTCTCCAGATAACGTTGTATCCATGCTAGACATTATACAACAAACAGCTTTGAAAATTGTTCGTGAAGAATCCAATGATGACCCTGCAAAGCAAAGTCGACTACAGGATCCTGATGATATTTATTATGTCCTGAAAAATAACAAGGGGAGTGAGGCTATTAGAAGCTTAGCTATTGATGTGTCGATGATTAAGGAGGTGCAGTTAAATCCAAAGGTGTTTGCAAAAATGAACAAGCTACGATATTTGGATATTTATAGTAACGGGTACTCTTATGATTTTCTCCGTAGTCGAGGGGGCTTGAATCTTTCTCAAGGGCTTGAATATTTGCCAAATGAAGTCAGATACCTTCGTTGGGCACGTTTCCCTTTGGAGTCCTTACCTTGCACTTTTTCTGGTGAAAAACTTGTTGTATTGGACTTGCAGTACAGCCGTGTGAGAAAACTTTGGCATGATAATCATAAGGATCttccaaatttaaaatatctgaAACTTGCTTCATCGTCACACCTGTTGGAGCTTCCAGACTTGTCAAATGCTAAAAATCTTGAATTAATTGATCTTCGTCTATGTTCAGGGTTGACTAGTGTACATCCATCCGTCTTTACTCTCAATAAGCTTGAGAAATTGGACCTAGGTGGATGTTTTTCCCTCAGAAGCTTTCGAAGCAATATCCGTTTCAGCTCCCTTCGTTATCTCTCGCTTGCTGGTTGCACTGCACTAAAGGAGTTCTCAGTAATCTCAAAGGATATGGTAATGTTGAATTTAGAAGTAACAGCTATCAAACAACTACCCTCATCaattggacttcaaaccaaacTTGAAAAGTTGCTTCTTGGGCACAGTTACATTGAGAGCTTGCCTGAAAGCATCAAGCTTCTTCCAAGGCTTAGACATCTAGATTTGCGACATTGTAGGAAGCTTCGAAGTCTACCAAAACTTCCTTCATCATTGATAACTCTAAATGTCAGTGACTGTGTATCGTTGGAGAATGTAACTTTCCCTTCAACTGCTGTTCAAATTGTAAGGGAAAACAAAAGAAGAGTGGCATTCTGGAATTGCTTGAAACTGGATCAACATTCTCTCAAGGCAATAGGGTTGAATGCACAAATTAACATTAAGAaatttgcatatcagcatatatCCATATCTCGTGATCATGATGATTATGATGCTCAAGGCACGTACGTGTACCCGGGAAGCAATGTTCCAGAATGGTTGGTGTATAGGACAACACGTTATTACATGACTATTGATCTCTCTTTTGTGAATCATTCCTCTCCATTGGCCTTCATTTTTTGCTTCATTGTTCCACAAGTTGAATCACCAGGTTTCATTTTGAGAGTTAATATTGGCGTTGATGAAGGTGAAGATATCCAATTCTACTTGGATAGGCCAAGTCGAGAAATTAAATCAGATCACGTGTATTTAATATCTGACCGTGGTTTTTCTCGCTATCTCAATAACCGAGTAAAAGATCGGCCAAAGTTCAAAATTATGGTTACAGCAGAATCACACACACTAACATCAGATTATCTGTCATTAATAATGTTGAGAGGGTTTGGGGTCAGCCCAATAAACACCTTATAA	3111	0.3645	MRTTDWILMCLMLILSLWYMPESVVEDHPYNNDPEIHDHHHKYDVFVNFRGSDIRDGFLAHLVKALSEKKIVTFVDYELKRGDEISALFDAIETSLISLVIFSPNYTNSAWCLDELVKIVECREINGQILLPVFYKVDPTIVRHQKGSYGNIAVAEKEKRFSSSRMEGWKSALRKSADISGFPSSDFSDDAKLIEEIVKDVLKRLDHGHLVNSKRLVGIGKQISHVESLLQAESQGVRAIGIWGMSGIGKTTIVEEVYSKLRSGYDGSHSIVDVRGECRKNGIMYLKKDMYSNLLKKDLDIDTRSGLPSSVVRMLRRTKVLVVLDGVNDLQQLNYLIGSTLDWFGNGSRIIITSGDKQVLVERGVDIYEVKPLDFDDSLRLFNMHAFEQNHAYLEEYYELSKMMVKHAAGIPSALEHLGLRLRGKDKEAWEKQLGRLKKRVPIKEVHEIFKLSYNDLDHHEKKILLDIACFFDGLHLKNDDIQLLVKDRDYSLADELDSLINKALVTISPDNVVSMLDIIQQTALKIVREESNDDPAKQSRLQDPDDIYYVLKNNKGSEAIRSLAIDVSMIKEVQLNPKVFAKMNKLRYLDIYSNGYSYDFLRSRGGLNLSQGLEYLPNEVRYLRWARFPLESLPCTFSGEKLVVLDLQYSRVRKLWHDNHKDLPNLKYLKLASSSHLLELPDLSNAKNLELIDLRLCSGLTSVHPSVFTLNKLEKLDLGGCFSLRSFRSNIRFSSLRYLSLAGCTALKEFSVISKDMVMLNLEVTAIKQLPSSIGLQTKLEKLLLGHSYIESLPESIKLLPRLRHLDLRHCRKLRSLPKLPSSLITLNVSDCVSLENVTFPSTAVQIVRENKRRVAFWNCLKLDQHSLKAIGLNAQINIKKFAYQHISISRDHDDYDAQGTYVYPGSNVPEWLVYRTTRYYMTIDLSFVNHSSPLAFIFCFIVPQVESPGFILRVNIGVDEGEDIQFYLDRPSREIKSDHVYLISDRGFSRYLNNRVKDRPKFKIMVTAESHTLTSDYLSLIMLRGFGVSPINTL	1036

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00621	1036	Pfam	NB-ARC domain	227	454	IPR002182	GO:0043531
	Tsu08g00621	1036	PRINTS	Disease resistance protein signature	239	254	-	-
	Tsu08g00621	1036	PRINTS	Disease resistance protein signature	314	328	-	-
	Tsu08g00621	1036	PRINTS	Disease resistance protein signature	408	422	-	-
	Tsu08g00621	1036	PRINTS	Disease resistance protein signature	799	815	-	-
	Tsu08g00621	1036	Gene3D	Ribonuclease Inhibitor	755	848	IPR032675	-
	Tsu08g00621	1036	Gene3D	-	373	458	IPR042197	-
	Tsu08g00621	1036	SUPERFAMILY	"Winged helix" DNA-binding domain	445	552	IPR036390	-
	Tsu08g00621	1036	SMART	till_3	42	179	IPR000157	GO:0007165
	Tsu08g00621	1036	Gene3D	-	40	207	IPR035897	-
	Tsu08g00621	1036	Gene3D	Ribonuclease Inhibitor	521	754	IPR032675	-
	Tsu08g00621	1036	SUPERFAMILY	Toll/Interleukin receptor TIR domain	35	182	IPR035897	-
	Tsu08g00621	1036	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	204	468	IPR027417	-
	Tsu08g00621	1036	Pfam	TIR domain	42	207	IPR000157	GO:0007165
	Tsu08g00621	1036	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	31	1035	IPR044974	GO:0006952
	Tsu08g00621	1036	ProSiteProfiles	TIR domain profile.	41	205	IPR000157	GO:0007165
	Tsu08g00621	1036	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	31	1035	-	-
	Tsu08g00621	1036	Gene3D	-	208	367	IPR027417	-
	Tsu08g00621	1036	SUPERFAMILY	L domain-like	565	841	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00621	Tsu-Chr8	6754141	6759919	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00621	22	819	WRKY Transcription Factor Family	AT4G12020	34.487	5.57e-110	374

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00621	-		-	cam:101503346	1175.23