Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00611 ATGGAAACAGTGATTGGAATTGTGGACAATGATGACGGGAAGCTTGAAGATAGTCGGGTTGATAGAAGCAATTCTGCTTTGTTTTCACCTAAGCAGATTTCCAACCCAGTTGTATACAAACTTGTTCggGTTGAAGGTGATGGGAGGTTAGTGCCGGCAACAGATGATGAAGTAATGGAGGTGGAGGATTTTCTTGAATATGAAAACAGTGATATGCGTGTTGTTGCAGACACtggacaaagtttggaatgCATATCAATCGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGTTCAGAAGGTGTTTCACAATTAGGCACTTCAGAAGCAGATTTGGGGAAGCTAAATGCAAAATTTCAGTATATTGAACAGATACTGCAAAAGGTTAAACAGGAAGAGAAACTTCGTTTGTCGTCTCGATCACCTGTTCATTCCCATGTACAAATAGATAGCCAGTGTTCTGCTGATAATCCTGTCATAAGTGAGAAGGTTCGGTCCAAAAATCCTTACCAGGAAGCACCGTCTATAGCATCGAGTTTAAATTACAGTCATAGCAATCAATCTGGTAGTATTGATCAGTGTTCCAGACCTTCTGAAGGAGTGATAGAAAGTGGATCATCTGCTTCTGCTGTCAATTCCGCTTTGACGCATGATTTTTCTATGACAGATGGAGAAATATGTTTGGACAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTTTAACTAACTCGTGCGATGTTTCAGCATCAACATTCACTGTTAAAGATaacaaaataactaaaaaatgtgaagaaGAATGTTCTGGAAATGTGAGTGCTGCAACTGTAATCTCTGTGGAAAATATGGATGGAGAAGGGGATGTCAAGTATAAGGATTCATGTGCAGTGGAGGATTGCGGAGTTGATGATAACCAAGTTGCTTCTGAAACAAGACTGGAAAATCTTAATACTGAACATGAATTAGATGAGGATCagcagagagaagagagagcTGCAAAAAGAATGCGTAAGCCCACCAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGCACAATCCTAGGTCATCAAGTTCTAATAAAAATACGGGACACAGCCATGTTACTCCAACTTCTGACATCAGGCCTGCTAAGAATGCTTTACCAGAGGTAAGAACATTTGTCACCAGGTTAGACTCTCTTGGAGGTTCTGGTGTTCAAATTCCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGAAAAATATCACGTCTCTTATGAAATTCCATCCAACTGGCATGGTTGAGACTGCAAAATTAGGCAATAAAGTTGTTAGAGATCATGGTTCTGACGCTGGTAGTGTGATTCAGGACAAAGTCTCAAAGCCAAGTTCCATGCCTGAGAAGATTCATCAGTCGGTGAGACCAACTGAGTCTGCTAGTGATAGAATGTCTAAGTCTACTTCTGAATCTGGAAAAGAGAAGCAGTGTCCGGTAATTGGCACAACCGGACCAAGGCAGGAAACAAAGCCGAAAAAGATAGATACATCTAGCTGTACTGAAGAGCGCAATATAGTTACTGTTCCTACTGCTAAAGGTGGAATGAGGAGGAAACATCATAGAGCATGGACCCTTGTTGAGGTAATGAAATTGATCGATGGTGTGTCTCGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGCACTCGCATCGTACCTCTGTTGATCTCAAGgACAAATGGAGGAATTTGCTCAAAGCTAGCTTTGCACCGACACCTGCAGATGATGGGATGAATTCGCGGAAGCATGGTACAGCTCCGATTCCTGAGCCAATTTTAGTACGCGTAAGAGAGCTTGCAGAGATAAATTCTCAAGTACCTCCAAATTTCAGCTCAAGCAAATTAACAACAACTGGTGGTACAGTGAATATGCATGGAGACAAATTGGGGTACTTGTAG 2031 0.4072 METVIGIVDNDDGKLEDSRVDRSNSALFSPKQISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSDMRVVADTGQSLECISIERSSSGKLRLECSEGVSQLGTSEADLGKLNAKFQYIEQILQKVKQEEKLRLSSRSPVHSHVQIDSQCSADNPVISEKVRSKNPYQEAPSIASSLNYSHSNQSGSIDQCSRPSEGVIESGSSASAVNSALTHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSASTFTVKDNKITKKCEEECSGNVSAATVISVENMDGEGDVKYKDSCAVEDCGVDDNQVASETRLENLNTEHELDEDQQREERAAKRMRKPTKRYIEELSENESREHNPRSSSSNKNTGHSHVTPTSDIRPAKNALPEVRTFVTRLDSLGGSGVQIPCVSRVRRSRPRKNITSLMKFHPTGMVETAKLGNKVVRDHGSDAGSVIQDKVSKPSSMPEKIHQSVRPTESASDRMSKSTSESGKEKQCPVIGTTGPRQETKPKKIDTSSCTEERNIVTVPTAKGGMRRKHHRAWTLVEVMKLIDGVSRCGPGRWSEIKRLSFSSHSHRTSVDLKDKWRNLLKASFAPTPADDGMNSRKHGTAPIPEPILVRVRELAEINSQVPPNFSSSKLTTTGGTVNMHGDKLGYL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00611 676 MobiDBLite consensus disorder prediction 182 206 - -
Tsu08g00611 676 PANTHER TRF-LIKE 3 1 674 - -
Tsu08g00611 676 CDD SANT_TRF 560 610 - -
Tsu08g00611 676 SUPERFAMILY Homeodomain-like 556 621 IPR009057 -
Tsu08g00611 676 ProSiteProfiles Myb-like domain profile. 562 609 IPR001005 -
Tsu08g00611 676 Gene3D - 549 655 - -
Tsu08g00611 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 554 613 IPR017930 -
Tsu08g00611 676 MobiDBLite consensus disorder prediction 337 381 - -
Tsu08g00611 676 Pfam Myb-like DNA-binding domain 561 609 IPR001005 -
Tsu08g00611 676 MobiDBLite consensus disorder prediction 473 539 - -
Tsu08g00611 676 MobiDBLite consensus disorder prediction 334 406 - -
Tsu08g00611 676 SMART sant 558 611 IPR001005 -
Tsu08g00611 676 MobiDBLite consensus disorder prediction 382 399 - -
Tsu08g00611 676 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 674 - -
Tsu08g00611 676 MobiDBLite consensus disorder prediction 476 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00611 Tsu-Chr8 6640808 6647075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00611 562 608 Single Myb Histone (SMH) Gene Family AT1G72740 46.939 4.51e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu08g00611 Myb_DNA-binding 8.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00611 - - mtr:MTR_8g020330 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00611 08 6640808 6647075 Tsu08g00611 08 6640808 6647075 ECH