Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00608 ATGCTAGAAAATGTAGTGTTCGGTTCAACTGCTAGTGAACAACTTAAGGAAAAGAGGAAAAGGGTTACCTTCAGGAATTACCTTAAACTAAACGAGCCTTCTCTCAAGACTATATGGTTGAATGCTCAAATTAACATGATGAGCTTTTCACACCAACATATATCCACATGTGATCGTCATCACATGTACGTGTATCCAGGCAAATTGTCAACAAGTCTCTTTACCGGACTGATAATTGAGCTTGTTTATTGcatATATCTTGTAACTCCCTCCAGAATGAAAAATTGTGAATCCAGTAGTAGCATGagtttattatttgtttatctCACACTCTTGCTTATTTCAAAACCGAGGGGTGTAGTTGCAAGCACAAttccaatttcattttcaaacaaacattACTATCGTTCATGTCCTGTGAAATTTTCTCCTTCCAGCCCCGTTCCTCAGATAAAATATGATGTCTTTGTTAGCTTCAGGGGAGGTGATATCCGCAAAAATTTCCTTAGCCATGTCCTTGAGGCTTTGTCGCGAAAGCAAATTAATGTCTATTCTGACATGAAGCTTAAACCAGGAGATGAAATATCAGAACTTCATAGAGCAATTGAAAAATCATCCATTTATTTGGTCATATTCTCCCCAGACTTTGCATCTTCACATTGGTGTTTGGATGAGCTTGTGAAAATAGTTGAGTGCAGAGCAAAATATGGTAGGATTCTAATACCAATTTTCTACCAAGTAGATCCCTCGGATGTACGGCATCAAAATGGGACTTATGGAGATGTTTTTGCTCAACATGAAAAAAACTATGATATGAACAAGGTGCTAAGCTGGAGATCTGCTTTGGAGCTATCTGCCAATATTTCTGGATGTCATCCGTCACACTTTTTGGATGATGCTAAGCTTGTTGAAAAAACAGTTCAAAGTGTATTGGAAAAGTTGAATCAAGTTGACCATGGTAAGTCAAAAGGACTTGTAGGAATTGAAAAGCAAATTTCACCTATAGAATCATTATTACTTTTAGAGTCGGAAGATGTTCGTGTTCTTGGAATTTGGGGCATGCCTGGTATTGGTAAAACAACTATTGCTGAAGAAGTATTTCGTAGACTACGTTCCAAATACGAAAGTTGTTGTTTTATGGCTAATGTAAGAGAAGAATCAGAAAGATGTGGCAAAAATAATTTGAGGTTAAGAAATAAGCTTTTATCCACTTTGTTGGAGgaagaagaattgaaagatGACATGATAAATGGATTACCTCCTTTGGTTAAGAAAAGGCTTAGTCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAAAGATGCAAAGCAACTAGAAGTATTGATTGGAACAGTTGATTGGTTAGGACCAGGAAGTAGAATCATCATAACTACTAGAGATAAGCAAGTACTTGCTGGAAAAATTGATGATATCTATGAGGTTGAGCCATTGGACTCTGCTGAATCTTTTCATCTTTTCAATTTACATGCCTTTACTAAACATGAGCATCTTCAAACGAAGTACTATAATCTATCAAAGCAGATGACCGATTATACCAAAGGTGTTCCATTAGTTCTTAAAGCTTTGGCTAACCTTCTTTGTGGGAAAGAGAGAGCCATATGGGAAAGTCAAGCGAGGATTCTGAAAATAGAGCAGATTGAAATTGTCCGTGAAGTTTTTAGATCAATATACACTGATCTTAATCAATATGAAAAGAATATATTCTTGGATATTGCCTGCTTTTTTGATGGATTGCAGTTGAAACTTGACCTCATAAAACTTCTATTGAAAGATCGTTATTATTCAGTGAGCACTAAATTAGACAGGCTAAAAGATAAAGCTCTTATTACTATTTCCCAGAAGAGCATTGTATCAATGCATGACATTATACAAGAAACAGCTTGGGAGATTGTTCGACAAGAATCTGTTGAAGAACCTGGAAACAGAAGTCGACTATTAGATCCTGATGACATTTATCATGTATTGAAACATAACAAgGGAAGTAAGGCCATCAGAAGTATGGCCATTAGATTATCTGAAATTAAGGAGCTGCAGTTAAGCCCTCAAGTATTTGCCAAGATGAGCAAGTTGAAATTTTTGGATATTTACACTAAGGGGTCTCCAAACAAAGGTAGTTTGTCTCTTCCACGAGGACTTGAATTCTTTCTTAATGAACTGAGATATCTTCGTTGGGAGTATTACCCTTTGGAATCCTTGCCATCCAAGTTTTCTGCAGAAAACCTTGTTACATTGAGCTTGCCTTATAGCCGATTGAAAAAACTTTGGCATGGAGTGAAGGATCTTGTAAATTTGAATGTCCTGATACTCCATTCATCCACACTCCTAACAGAGCTACCGGACTTTTCAAAGGCCACAAGTCTTGTAATGATGGACCTTCATTTCTGTGTAGGGTTGACTAGTGTCCATCCATCtgttttctctctcaaaaaccTAAAGAAACTGGATCTGAGTGGATGTGTTTCCCTTAAAAGCCTTCAAAGCAATAATACCCATTTAAGTTCCCTTAGTTATCTCTCCCTCTACAATTGTACATCACTGAAGGAATTTTCAGTGACCTCGAAGAATATGAACGAACTGAACTTAGAACTCACAAGTATCAAAGAACTACCCTCATCAATTGTACTTCAAACTAAACTTGAAAAGTTACATCTAGGACACACTCACATTGAGAGCTTGCCTAAGAGCATCAAGAATCTTACAAGGTTGAAACAACTAGGCTTGCATCATTGCAGAGAGCTTCAAACTCTACCGGAGCTTCCTCTATCGCTAGAAATACTAGATGCAATTGGTTGTGTATCACTAGAGAATGTAGTGTTCGGTTCAACTGCTAGTGAACAACTTAAGGAAAAGAGGAAAAGGGTTATCTTCTGGAATTGCCTTAAACTAAATGAGCCTTCTCTCAAGGCTATTGGGTTGAATGCACAAATTAACATGATGAGCTTTTCACACAGACATATATCCACATTCGATCATGATCATCATAATCATGATCATGATCTTAATCAACACATGTACGTGTATCCAGGAAGCAAAATTCCAGAGTGGTTGGAATATAGTACAACTACACATGATTTCTTAACTATTGATCTTTCTTCCGCTCCTTATTTCTCTAGGTTAGGCTTCATTTTTGGCTTCATCATTCCAACCATCTCATCAGAGGGTCCAATTCTTAAATTCAAAATCAGTGATTGTGATGGCTTCATCATTCCAACCATCTCATCAGAGGGTTCCATTCTTAAATTCAAAATCCGTGATTGTGATAGTGAAGATGAAGGTATTAAAGTGTACTTGAACAGACCACATCACGGAATTGAATCGGATCATGTGTATCTAATTTATGACCCAAGATTGTCTCATTACCTAGCTAGCCGAGTCAATGATTGGTCAATTCTTAAAATTCAGGTTAGAGCAGCATCAAGAACACCGAAATCACAGTACATGCCAGTGCAGTTAAAAGGGTTTGGGGTTAGCCTAGTAACCCCTTCACTATATGACAAGTTTAAACAGCAATTGGAATTTGGTGATGATAGTGTTGTTCCAGATAATACATGTCCGGTGGAAGAGAGATCGATATTGCAGGCTTTGATTGAATAA 3615 0.366 MLENVVFGSTASEQLKEKRKRVTFRNYLKLNEPSLKTIWLNAQINMMSFSHQHISTCDRHHMYVYPGKLSTSLFTGLIIELVYCIYLVTPSRMKNCESSSSMSLLFVYLTLLLISKPRGVVASTIPISFSNKHYYRSCPVKFSPSSPVPQIKYDVFVSFRGGDIRKNFLSHVLEALSRKQINVYSDMKLKPGDEISELHRAIEKSSIYLVIFSPDFASSHWCLDELVKIVECRAKYGRILIPIFYQVDPSDVRHQNGTYGDVFAQHEKNYDMNKVLSWRSALELSANISGCHPSHFLDDAKLVEKTVQSVLEKLNQVDHGKSKGLVGIEKQISPIESLLLLESEDVRVLGIWGMPGIGKTTIAEEVFRRLRSKYESCCFMANVREESERCGKNNLRLRNKLLSTLLEEEELKDDMINGLPPLVKKRLSRMKVLIVLDDVKDAKQLEVLIGTVDWLGPGSRIIITTRDKQVLAGKIDDIYEVEPLDSAESFHLFNLHAFTKHEHLQTKYYNLSKQMTDYTKGVPLVLKALANLLCGKERAIWESQARILKIEQIEIVREVFRSIYTDLNQYEKNIFLDIACFFDGLQLKLDLIKLLLKDRYYSVSTKLDRLKDKALITISQKSIVSMHDIIQETAWEIVRQESVEEPGNRSRLLDPDDIYHVLKHNKGSKAIRSMAIRLSEIKELQLSPQVFAKMSKLKFLDIYTKGSPNKGSLSLPRGLEFFLNELRYLRWEYYPLESLPSKFSAENLVTLSLPYSRLKKLWHGVKDLVNLNVLILHSSTLLTELPDFSKATSLVMMDLHFCVGLTSVHPSVFSLKNLKKLDLSGCVSLKSLQSNNTHLSSLSYLSLYNCTSLKEFSVTSKNMNELNLELTSIKELPSSIVLQTKLEKLHLGHTHIESLPKSIKNLTRLKQLGLHHCRELQTLPELPLSLEILDAIGCVSLENVVFGSTASEQLKEKRKRVIFWNCLKLNEPSLKAIGLNAQINMMSFSHRHISTFDHDHHNHDHDLNQHMYVYPGSKIPEWLEYSTTTHDFLTIDLSSAPYFSRLGFIFGFIIPTISSEGPILKFKISDCDGFIIPTISSEGSILKFKIRDCDSEDEGIKVYLNRPHHGIESDHVYLIYDPRLSHYLASRVNDWSILKIQVRAASRTPKSQYMPVQLKGFGVSLVTPSLYDKFKQQLEFGDDSVVPDNTCPVEERSILQALIE 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00608 1204 SUPERFAMILY Toll/Interleukin receptor TIR domain 143 290 IPR035897 -
Tsu08g00608 1204 Pfam NB-ARC domain 340 560 IPR002182 GO:0043531
Tsu08g00608 1204 Gene3D - 150 316 IPR035897 -
Tsu08g00608 1204 PRINTS Disease resistance protein signature 519 533 - -
Tsu08g00608 1204 PRINTS Disease resistance protein signature 426 440 - -
Tsu08g00608 1204 PRINTS Disease resistance protein signature 813 829 - -
Tsu08g00608 1204 PRINTS Disease resistance protein signature 348 363 - -
Tsu08g00608 1204 Gene3D Ribonuclease Inhibitor 862 1038 IPR032675 -
Tsu08g00608 1204 SMART till_3 152 288 IPR000157 GO:0007165
Tsu08g00608 1204 Pfam TIR domain 152 324 IPR000157 GO:0007165
Tsu08g00608 1204 SUPERFAMILY L domain-like 676 997 - -
Tsu08g00608 1204 Pfam Leucine Rich Repeat 747 766 IPR011713 -
Tsu08g00608 1204 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 18 70 - -
Tsu08g00608 1204 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 148 1197 - -
Tsu08g00608 1204 ProSiteProfiles TIR domain profile. 151 314 IPR000157 GO:0007165
Tsu08g00608 1204 Gene3D Ribonuclease Inhibitor 645 861 IPR032675 -
Tsu08g00608 1204 SUPERFAMILY "Winged helix" DNA-binding domain 557 663 IPR036390 -
Tsu08g00608 1204 Gene3D - 317 476 IPR027417 -
Tsu08g00608 1204 Coils Coil 392 412 - -
Tsu08g00608 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 578 IPR027417 -
Tsu08g00608 1204 Gene3D - 484 568 IPR042197 -
Tsu08g00608 1204 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 70 IPR044974 GO:0006952
Tsu08g00608 1204 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 148 1197 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00608 Tsu-Chr8 6618190 6631296 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00608 114 925 WRKY Transcription Factor Family AT4G12020 34.375 8.19e-120 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00608 - - mtr:MTR_8g020360 1584.7