Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00606 ATGGATAATGGATGCCATCAGCCACAAAATCTTAGGCACATGGTGGGCGAGAAAAAGGGAGATGATGGATGTCTTTTCTTTGCTGATGAATTTTTGCTGCCTGATTATGTTGTTGCAGATGCTGAAGATTTCTATAACCAATGTGATCCTGACATGGAAAATCTGTGTTTATACGGCTTTCCCAATGAGGAGTGGAAAGTCAATTTACCTGTTGAAAAAATTCCACCAGAGCTACCTGAGCCTGCCCTAGGCATTAACTTTGCTCGGGATGGAATGCAAAAAGTTGATTGGCTTTCGTTAGTTGCCGCTCATAGTGATGCATGGTTATCTGGCATTGCATTCTATTATGGAGGTGAATTTGGGTTTAACAAATCTGATAGGGAGCGCCTTTTCAATATGATCAATGAACTGCCATCAATATTGGAAGTTGTTACTGATGCTGCAAAGAAACAAGTTGAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCCAACTCCAGCTTGATATtgCAGGCTCGAAGTCCCCATGTTAAGGAGACAAGGGCATTGGAACCCGAAGTTGTGGAAGAGGCAATGGAGGAAGATGATGAGGATGTTTTATGCAATATATGTTTTTTGCATTATGGTGAGGACTCCTTTTGGATTTTCTGTGACTTCTGCAATAATTGGTTTTATCTTGGGACAATTCTGGAAATCAAATTAACGAACACAAAAAAGGCTAATGCGATCTTGATTGTACGTTTCATTTaa 756 0.4021 MDNGCHQPQNLRHMVGEKKGDDGCLFFADEFLLPDYVVADAEDFYNQCDPDMENLCLYGFPNEEWKVNLPVEKIPPELPEPALGINFARDGMQKVDWLSLVAAHSDAWLSGIAFYYGGEFGFNKSDRERLFNMINELPSILEVVTDAAKKQVEEKSSVSNHSGSKSNSSLILQARSPHVKETRALEPEVVEEAMEEDDEDVLCNICFLHYGEDSFWIFCDFCNNWFYLGTILEIKLTNTKKANAILIVRFI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00606 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 243 IPR013083 -
Tsu08g00606 251 PANTHER CPG BINDING PROTEIN 38 232 IPR045104 GO:0006355|GO:0042393
Tsu08g00606 251 SUPERFAMILY FYVE/PHD zinc finger 185 228 IPR011011 -
Tsu08g00606 251 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 38 232 - -
Tsu08g00606 251 Pfam Alfin 39 145 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00606 Tsu-Chr8 6604113 6607536 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00606 37 234 Alfin-like Transcription Factor Family AT3G42790 52.475 7.75e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00606 - - gmx:100794662 258.84