Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00605 ATGGACTCACACCCACAGTATAATACTTACACTGTCGAACATGTCTTTCAAGATTTTAAAGGTCGCCGAGTTGGTCTCATCAAAGCTCTCACCACTGATGCTGAAGATTTCTATAACCAATGTGATCCTGACAAGGAAAATCTGTGTTTATACGGCTTTCCTAATGAGGAGTGGAAAGTCAATTTACCTGTTGAAAAAATTCCACCAGAGCTACCTGAGCCTGCCCTGGGCATTAACTTTGCTAGGTATGGAATGCAAAAAGCTGATTGGCTTTCGTTTGTTGCCGCTCATAGTGATGCATGGTTATCTGGCATTGCATTCTATTATGGAGGTGAATTTGGGTTTAACAAATCTGATAGGGAGCGCCTTTTCAATATGATCAATGAACTGCCATCAATATTGGAAGTTGTTACTGATGCTGCAAAGAAACAAGTTGAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCCCACTCCAGCTTGATATtgCAGGCTCGAAGTCCCCATGTTAAGGAGACAAGGGCATTGGAACCTGAAGTTGTGGAAGAGGCAATGGAGGAAGATGATGAGGATGTTTTATGCAATATATGTTTTTTGCATTATGGTGAGGACTCTTTCTGGATTTTTTGTGACTACTGCAATAATTGGTATGATGGAAAGTGTGTGGAGGTTACGCCTGCTATTGCTGAAGAAATCAATAAATACGAGTGTCCTTTTTGTCGGATTCAATTCGTACGATGA 747 0.4096 MDSHPQYNTYTVEHVFQDFKGRRVGLIKALTTDAEDFYNQCDPDKENLCLYGFPNEEWKVNLPVEKIPPELPEPALGINFARYGMQKADWLSFVAAHSDAWLSGIAFYYGGEFGFNKSDRERLFNMINELPSILEVVTDAAKKQVEEKSSVSNHSGSKSHSSLILQARSPHVKETRALEPEVVEEAMEEDDEDVLCNICFLHYGEDSFWIFCDYCNNWYDGKCVEVTPAIAEEINKYECPFCRIQFVR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00605 248 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Tsu08g00605 248 SUPERFAMILY FYVE/PHD zinc finger 188 244 IPR011011 -
Tsu08g00605 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Tsu08g00605 248 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 243 - -
Tsu08g00605 248 PANTHER CPG BINDING PROTEIN 6 243 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00605 Tsu-Chr8 6572259 6575948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00605 7 248 Alfin-like Transcription Factor Family AT3G42790 54.878 2.04e-83 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00605 - - gmx:100794662 324.709