Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00603 ATGACTTTTCTTCACCCAGCTGACAACAATAACCAAAGCTCCTATGATGAATATGTTACTGTTTTTTTAACTGCAGAATATTTGTCAGATATTGAACTCCTGCCTTTAATCGGAAAACTACATCCATCTGGGCATTTATGGAAAATAACAAGAAACATACTTATTTTACAGGTCTTTCAAGATTTTAAGGGTCGCCGAGCTGGTCTCATCAAAGCTCTCACCACTGATGTCGAAGATTTCTATAACCAATGTGATCCTGACAAGGAAAACCTGTGTTTGTACGGCTTTCCTAATGAGGAGTGGAAACTCAATTTACCTGCTGAAGCTATTCCATCAGAGCTTCCCGAGCCATCCTTGGGTATTAACTTTGCTAGGTCTGGAATGCAAAAAACAGATTGGCTGTCCTTAGTTGCCGCTCATAGCGATTCTTGGTTAGTTGGCGTTGCATCCTATTATGGAGCTCAATATGGGTTTAACAAATCTGACAGGGAGCGCCTTTTCAGTATGATCAATGAACTGCCAACAATATTGGAAATTGTTACTGATGCTGCAAAGAAACAAGTTGAGAAGTCTTCAGTTTCAAACCACAGTGGCAGCAAATCAAAGTCCAACTCGATAGcgCAGGCTCCAGATCCACATTTTAAGGAGACAAAGGCGAAACCCAATGTTGTGGAAGAGGAAatggatgatgatgagaatATTCTATGCAACGTATGTTGTATGCATTTTGGCGAGGACTCTTTCTGGATTTTGTGCGACTTTTGTGATAATTGGTATCATGGGAAGTGTGTGAATGTTACACCTTCCATTGCTGAGGAAATCAACAAATACGAGTGTCCTTATTGTATGTTGCAATTCGGTCCATGA 867 0.3956 MTFLHPADNNNQSSYDEYVTVFLTAEYLSDIELLPLIGKLHPSGHLWKITRNILILQVFQDFKGRRAGLIKALTTDVEDFYNQCDPDKENLCLYGFPNEEWKLNLPAEAIPSELPEPSLGINFARSGMQKTDWLSLVAAHSDSWLVGVASYYGAQYGFNKSDRERLFSMINELPTILEIVTDAAKKQVEKSSVSNHSGSKSKSNSIAQAPDPHFKETKAKPNVVEEEMDDDENILCNVCCMHFGEDSFWILCDFCDNWYHGKCVNVTPSIAEEINKYECPYCMLQFGP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00603 288 Pfam PHD-finger 236 283 IPR019787 -
Tsu08g00603 288 ProSiteProfiles Zinc finger PHD-type profile. 233 285 IPR019787 -
Tsu08g00603 288 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 55 282 - -
Tsu08g00603 288 SMART PHD_3 235 283 IPR001965 -
Tsu08g00603 288 MobiDBLite consensus disorder prediction 190 210 - -
Tsu08g00603 288 PANTHER CPG BINDING PROTEIN 55 282 IPR045104 GO:0006355|GO:0042393
Tsu08g00603 288 ProSitePatterns Zinc finger PHD-type signature. 236 282 IPR019786 -
Tsu08g00603 288 SUPERFAMILY FYVE/PHD zinc finger 225 285 IPR011011 -
Tsu08g00603 288 Pfam Alfin 56 181 IPR021998 GO:0006355|GO:0042393
Tsu08g00603 288 MobiDBLite consensus disorder prediction 190 222 - -
Tsu08g00603 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00603 Tsu-Chr8 6540167 6546052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00603 55 282 Alfin-like Transcription Factor Family AT3G42790 55.172 3.68e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu08g00603 Alfin 2.7e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00603 - - gmx:100170700 315.079