Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00600 ATGAGAACTGAAACTGCAACAAACACAGACACCAAAGATTCAGATTCTCTCTGTCCGGTGATACCTAATTATGATGTCTTTGTTAACTTTCACAGTCCAGACACAAGCGATGGTTTTCTTAGACATACGGATGAAGCTTTCACTACAAACAAAATTTTAGCCTTCATAGATAATAAGCTTCATAAAGGAGATGAAATATTACCATCACTTATTAAAGCAATTGAAACATCCTTCATTTCGTTGGTAATATTTTCACAGAATTATGCTTCTTCAGCTTGGTGTTTGGATGAACTTGTCAAAATTGTTCAGTGTAGAAAAAAAGATGGACAGATTTTGATGCCTGTTTTCTACAGAGTGGATCCCATAACTGTGAGGCATCAAAAGGGAACTTATGCAAATGCATTTGCTGAACATGAAAAAAGACATGATCTGACTAGAGTACAACAATGGAGATCTGCTCTGAATGAATCCGCCAAAATCTGTGGATATCACTCATCAAAGTTTCCGGATGACACCGCACTTGTTGAAGAAATAGTTAATAGAGTGTTGAAGGAGTTGGATCGTGTTAAGAGAATTAATTCAAAAGGACTTGTTGGAATTGACAAACAAATTTCACATGTGGAATCATTGTTACAGACAGGATCAAAAGACATCCGCCGTGCCATTGGAATTTGGGGAATGAATGGTATAGGTAAAACAACCATTGCAGAAGAAGTATATAGCAGACTACGttctgattctgattatgaaAGTTGTTACTTTAAGGCTCATGTGAGAGAAGAATCAAGAAGACATGGAATTATGTCTTTAAAGGAAGAGCTTTATTCTACTCTATTAGGGGACCAAGATTTGAAAATTGACACAGCAGATGGACTGCCAGACTCTGTTAAGAGAAAGCTTACTGATAAGAAGGTTCTTTTTGTTCTTGATGATGTCAATGATCTACAACAGCTAGAAACTTTAATTGGATCAAAACTTGATTTGTTTGGAAATGGTAGTAGAATAATCATCACAAGTGGAGACAAACAAGTACTATTTGCCGGAGGGGTCGATGATATATATGAAGTTAAGCCATTAGAATTTAATGACTCTCTTAGGCTTTTCAATATAAATGCCTTtgaaaaaaatcatacaaatacaaaagAGTACAAGGAGTTGGCCAAGATGATGGTTAAGTATGCCGAAGGAATTCCACTTGTTCTTAAAGTTTTGGGTCGTCTGCTTCGTCGAAAAGATAAAGAAGTATGGGAAGACTATTTAGGGAGGTTTAGAAAAAACATTCCAATTAAAATAGTTCATCAAATTTTCAGATCGAGTTATAATGATCTTGATCATCACGAGAAGAAGATATTTTTAGACATTGGATGTTTTTTCAATGGATTGTCTCTCAAAGTTGACGACATACAACTGTTGCTAAAAGACCATGATTATTCAATGTGTTTTGAGTtcgaaaatttgaaaaataaagctCTCATAACAATATCTCCTCTTAATGTTGTATCCATGCACAACATTATAAAACAATCAGCTTTGGAAATTGTTCGCGAAGAATCCAATGGTGACTATGAAAAGCAAAGTCGACTACTGGATCCTGATGATATTTATTATATACTGAAAAATAACAAGGGAAGTGAGGCTATTAGAACCTTAGCTATTGATGTGTCGATAATTAAGGAGCTGCAGTTACATCCAAAGGTGTTTGCAAAAATGAACAAGCTACAATATTTGGATATTTATAGTAAGGAGTACTCACGTGATTTTGTCCAAAGTCGAAGGGGCTTGTATTTTCCTCAAGGGCTTGAATCTTTGCCAAATGAACTCAGATACCTTCGATGGGCACATTTTCCATTTGGGTCCTTACCATCCAATTTTTCTGGTGAAAAACTTGTTGTATTGGACTTGCAGTACAGCAATCTGACCCAACTTTGGCATGAAGATTATAAGGTAAAACAATATGCTTCTGCATTTGCAGGATCTTCATCATTACTACTGCAGGATCttgcaaatttaaaatatcttaaaCTTGATTCATCGTCATTCCTGGTGGAGTTTCCAGACTTGTCAAATGCTACTAATCTTGAAGTAATTGATCTTCGTCTCTGTACAAGGTTGAAAAGTGTACATCCATCTGTCTTTACTCTCAATAAGCTCAAGAAATTGGACCTAGGTGGATGTTTTTCCCTTGAAAGCTTTAAAAGTGATATCCATTTAACCTCCCTTCGTTATCTCTCCCTCGCTAGTTGCTCTGCACTAAAGGAGTTCTCAGTAACCTCAAAGGAAATGGTAAAGTTGAATTTAGAAAGAACATGTATCAAACAACTACCATCATCAATTAAACTTCAAACCAAACTTGAAAAGTTGCTTCTTGCACACAGTTACATTGAGAACTTGCCCGAAAGCATCAAGAATCTTACAAGGTTGAGTCATCTAGGCTTACAAAATTGTAGTAAGCTTCGAAGTCTACCAGAGCTACCTCCATCATTGATAATTCTAGATGCTAGTGGCTGTGTATCACTGGAGAATGTAGATTTCCCTTCAACTGCTCATCAAATGTTAAAGGAAAACAAGACACGGGTTGCGTTCTGGAATTGCCTAAAACTGAACCAACGTTCTCTCAATGCAGTACGGTTGAATGCAAAAATTAACATGATGAAATTCACACATCATCATATATCCATGTCCCGTGATCACGATTATGATGCTCAAAGCACATACGTGTACCCAGGAAGCAATGTTCCAGAATGGTTATTGTATAGGACAACACATGATAAAATGACTATTGATCTCTCCTTTGGTAACCATTCATCTCCATTGGGCTTCATTTTTTGCTTCATTGTTCCACAAGTTCCATCAGAGGGTTTCATTTTGAGATTTAATATTGAAATTGATGAAGGTGAAGAAGATATCCAGTTGTACTTGGATAGGCCTAGGCAGGAAATTAGATCAGATCATGTGTGTTTAATATATTACCGAAGTTTTTCTCGCTATCTCAATTGCAGAGTCAAAGATAGGTCAAAGTTCAAAATTAAGGTTACAGCAGAATCACGAACACTTACAACACACTTTCGAGGTTCTGACATCCGCGAAGGTTTTCTTAGTCATTTGGTCGAAGCTCTTTCTCGAAAGAAAATTGTTGTCTTTGTAGATAATAAGCTTCATAAAGGAGATGAAATATCACAATCACTTGTTCAAGCTATTGAAACATCATTGATTTCTTTAGTAATATTTTCAACTAATTATGCTTCTTCACCTTGGTGTTTGGATGAGTTAGTTAAAATTGTTGAATGTAGAGAGAAAAATGGACAGATTTTATTGCCTGTTTTCTACAAATTGGACCCTACTATTGTGAGACATCAAAAGGGAACTTATGCAAATGAATTTGGtgaacatgaaaaaaaatacaatttgagTAAGGTGCAACAATGGAGATATGCTCTAAAGGAATCTGGTAATATGTTTGGATTTCATTCATCAAATTTTAGGAATGATGCTCTACTTGTTGAGGAAATAGTTAGCTATGTGTTGACAAGGTTGGATCAAGTGCAACAAGTTAACTCAAAAGGACTTATTGGACTTGGCAAACAAATTTCACATGTTGAATCATTGTTACAGACAGAGTCAAATGATGTTCGTGCCATTGGAATTTGGGGAATGAGTGGTATAGGTAAAACAACTATTGCAGAACAAGTATACAGCAGACTATGTTCTGAATATGAATCTTGTTACTTTAAGGCTAATGTAAGAGAAGAATGGGGAAGATATGGAGATATGTATTTAAAGAAAGATATTTTTTCTACTCTATTAGGGGAACAAGAATTGAAAATTGACACACCACATGGATTGCCAGGTTTTGTTGAAAGGAGGCTTCGTCGTATGAAGGTTCTTGTTGTTCTTGACGATGTCAATGATCTACAACAACTAGAAATTTTAATTGGAACACTAGATTGGTTTGGAAATGGTAGTAGAATCATCATAACAACTAGAGATAAGCAAGTACTTGCCAAAAGGGTTGTTGATAGTGATATATATGAGGTAAAAGCATTGGAATTTGATGACTCTTTTCGACTTTTCATTTTGAATGCCTTTAAACAAAACCATCTTGAAAAAGAGTACTTTGATTTGTCTAAAAAGATAGTCAGTTATGCTAAAGGCAATCCATTAATTGTTGAAGTTTTGGGTCGTCATCTTCGTGGGAAAGACAAAACAATATGGGAAAGCCAGTTGCAGAGGCTTACAAAAGTACCAATTAAAAAAGTTCAAGATGCTGTTAGATTGAGTTACAATGACCTTGATCGTCACGAGAAGAAGATACTTTTGGACATTGCATGTTTTTTAGATGGATTGCATCTAAAAGTTGACCTAATAAAATTGTTGGTGAAAGATCATGGTTATTCAGTAGATGTTGAGTTAGAAAGCCTTAAAAATAAAGCTCTCATAACTATTTCTCAAGATAATGTTGTATCCATGCATAGCATTATACAAGAAACGGCTGAGGAAATTGTTCGGGAAGAATCCATTGACGACCCTGGAAAGCAAAGTCGACTACTAGATCCTAATGATATTTACCAAGTACTGAAAAATAACAAGGGTAGTGAGGCTATTAGAAGCTTAGCTATCAACTTGTCAAAAATGAAGGAGGTGCAGTTAAATCCAAAGGTGTTTGCTAAAATGAAGAAACTACAATATCTGGATATCTATGGTAAGGGGTCCTCTTGTGATATTCTCCGGAGTCGAGGGGGCTTGTATCTTCCTCAAGGGCTTGAATCTTTGCCAAATGAACTCAGATACCTTCGGTGGGCACATTTCCCTTTGGAGTCCTTACCATCAGATTTTTCTGGAGAAAAACTAGTTCTATTGGACTTGCAAGATAGCCAAGTGAGAGAACTTTGGCATGAAGATCATAAGGATCTAGTTAATTTAAAGTATCTTAAGCTTCGTTCATCCTCACACCTGGTGGAGCTTCCAGACTTGTCATCTGCTACAAATCTTGAAGTAATTGATCTTCGTCTCTGTGGGATAACTAGTGTACATCCATCTGTCTTTACTCTAAACAAGCTTATGAAATTAGACCTAGGTGGATGCATTTCCCTAATAAGCTTTCGAAGCAGTAACGATTTAAGCTCCCTTCGTTATCTCTCCCTCGCTAGTTGCATTTCACTGAAGGATTTCTCAGTAACCTCAAAGGAAATGGTAAAGTTGAATTTAGAATTCACAGGTATCAAACAACTACCATCATCaattggacttcaaaccaaacTTGAAAAGTTGCTTCTTGGACACAGTTACATTGAGAACTTGCCAGAAAGCGTCAAACTTCTTACAAGTCTGAGACATCTAGGCTTACAAGATTGTAGGAAGCTTCAAAGTCTACCTGAGCTACCTTCATCATTGATAGCTCTAGATGCCAGTGGCTGTCTATCATTGGAGAATGTAACTTTTCCTTCAACTGCAATTCAAATGTTAAAGGAAAACAAGACGAGGGTTGCCTTCTGGAATTGCCTGAAACTGAATGAACATTCTCTCAAGGCAGTAGAGATAAATGCACAAATTAACATGATGAAATTTGCACATCAGCATATACCCATGTCTCATAGTCACCCTTATGATGCTAAAGGCACGTTCGTGTACCCGGGAAGCAGTGTTCCAAAATGGTTGGTGTATAGGACAACACACGATTACATGACTATTGATCTCCCTTTTGCTAACCATTCCTCTCAATTGGGATTCATATTTTGCTTCATTGTTCCACCGGTTCCATCACAGGGTTTCATTTTGAGATTTAATATTAGTGTTGATGAAGGTGATGATAGTCAATTGCACTTGGATAGGCCAAGTCATGAAATTAAATCAGATCACGTGTATTTAGTATATGACCGAGGTTTTTCTCACTATCTCAATAGCCGAGTCAAAGATCAGCCAAAGTTCAAAATTAAGATTACAGCAGAATCACGCACACTAACATCAGAGTACGTGTCACTAAAGATGTTGAGAGGGTTTGGGGTCAGTCCAATAAACACCTCACAGTATCTAAATTTCATTCAACACATGGAAATGGCTGAAGGTCCAAGTATCCCAACTTCATTATGGGGTGTTGTTAACAGTCTTTTAGTAGTACTTTTTTGTACAGGATTATTCCTAAAGTTTGTTTAA 6150 0.3593 MRTETATNTDTKDSDSLCPVIPNYDVFVNFHSPDTSDGFLRHTDEAFTTNKILAFIDNKLHKGDEILPSLIKAIETSFISLVIFSQNYASSAWCLDELVKIVQCRKKDGQILMPVFYRVDPITVRHQKGTYANAFAEHEKRHDLTRVQQWRSALNESAKICGYHSSKFPDDTALVEEIVNRVLKELDRVKRINSKGLVGIDKQISHVESLLQTGSKDIRRAIGIWGMNGIGKTTIAEEVYSRLRSDSDYESCYFKAHVREESRRHGIMSLKEELYSTLLGDQDLKIDTADGLPDSVKRKLTDKKVLFVLDDVNDLQQLETLIGSKLDLFGNGSRIIITSGDKQVLFAGGVDDIYEVKPLEFNDSLRLFNINAFEKNHTNTKEYKELAKMMVKYAEGIPLVLKVLGRLLRRKDKEVWEDYLGRFRKNIPIKIVHQIFRSSYNDLDHHEKKIFLDIGCFFNGLSLKVDDIQLLLKDHDYSMCFEFENLKNKALITISPLNVVSMHNIIKQSALEIVREESNGDYEKQSRLLDPDDIYYILKNNKGSEAIRTLAIDVSIIKELQLHPKVFAKMNKLQYLDIYSKEYSRDFVQSRRGLYFPQGLESLPNELRYLRWAHFPFGSLPSNFSGEKLVVLDLQYSNLTQLWHEDYKVKQYASAFAGSSSLLLQDLANLKYLKLDSSSFLVEFPDLSNATNLEVIDLRLCTRLKSVHPSVFTLNKLKKLDLGGCFSLESFKSDIHLTSLRYLSLASCSALKEFSVTSKEMVKLNLERTCIKQLPSSIKLQTKLEKLLLAHSYIENLPESIKNLTRLSHLGLQNCSKLRSLPELPPSLIILDASGCVSLENVDFPSTAHQMLKENKTRVAFWNCLKLNQRSLNAVRLNAKINMMKFTHHHISMSRDHDYDAQSTYVYPGSNVPEWLLYRTTHDKMTIDLSFGNHSSPLGFIFCFIVPQVPSEGFILRFNIEIDEGEEDIQLYLDRPRQEIRSDHVCLIYYRSFSRYLNCRVKDRSKFKIKVTAESRTLTTHFRGSDIREGFLSHLVEALSRKKIVVFVDNKLHKGDEISQSLVQAIETSLISLVIFSTNYASSPWCLDELVKIVECREKNGQILLPVFYKLDPTIVRHQKGTYANEFGEHEKKYNLSKVQQWRYALKESGNMFGFHSSNFRNDALLVEEIVSYVLTRLDQVQQVNSKGLIGLGKQISHVESLLQTESNDVRAIGIWGMSGIGKTTIAEQVYSRLCSEYESCYFKANVREEWGRYGDMYLKKDIFSTLLGEQELKIDTPHGLPGFVERRLRRMKVLVVLDDVNDLQQLEILIGTLDWFGNGSRIIITTRDKQVLAKRVVDSDIYEVKALEFDDSFRLFILNAFKQNHLEKEYFDLSKKIVSYAKGNPLIVEVLGRHLRGKDKTIWESQLQRLTKVPIKKVQDAVRLSYNDLDRHEKKILLDIACFLDGLHLKVDLIKLLVKDHGYSVDVELESLKNKALITISQDNVVSMHSIIQETAEEIVREESIDDPGKQSRLLDPNDIYQVLKNNKGSEAIRSLAINLSKMKEVQLNPKVFAKMKKLQYLDIYGKGSSCDILRSRGGLYLPQGLESLPNELRYLRWAHFPLESLPSDFSGEKLVLLDLQDSQVRELWHEDHKDLVNLKYLKLRSSSHLVELPDLSSATNLEVIDLRLCGITSVHPSVFTLNKLMKLDLGGCISLISFRSSNDLSSLRYLSLASCISLKDFSVTSKEMVKLNLEFTGIKQLPSSIGLQTKLEKLLLGHSYIENLPESVKLLTSLRHLGLQDCRKLQSLPELPSSLIALDASGCLSLENVTFPSTAIQMLKENKTRVAFWNCLKLNEHSLKAVEINAQINMMKFAHQHIPMSHSHPYDAKGTFVYPGSSVPKWLVYRTTHDYMTIDLPFANHSSQLGFIFCFIVPPVPSQGFILRFNISVDEGDDSQLHLDRPSHEIKSDHVYLVYDRGFSHYLNSRVKDQPKFKIKITAESRTLTSEYVSLKMLRGFGVSPINTSQYLNFIQHMEMAEGPSIPTSLWGVVNSLLVVLFCTGLFLKFV 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00600 2049 SUPERFAMILY "Winged helix" DNA-binding domain 432 538 IPR036390 -
Tsu08g00600 2049 Gene3D Ribonuclease Inhibitor 760 887 IPR032675 -
Tsu08g00600 2049 Gene3D - 22 188 IPR035897 -
Tsu08g00600 2049 Gene3D - 1020 1182 IPR035897 -
Tsu08g00600 2049 SMART AAA_5 218 351 IPR003593 -
Tsu08g00600 2049 SMART AAA_5 1209 1348 IPR003593 -
Tsu08g00600 2049 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 1021 2041 - -
Tsu08g00600 2049 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 21 1021 - -
Tsu08g00600 2049 SUPERFAMILY Toll/Interleukin receptor TIR domain 1022 1155 IPR035897 -
Tsu08g00600 2049 Pfam TIR domain 23 194 IPR000157 GO:0007165
Tsu08g00600 2049 Pfam TIR domain 1021 1183 IPR000157 GO:0007165
Tsu08g00600 2049 Gene3D Ribonuclease Inhibitor 1525 1694 IPR032675 -
Tsu08g00600 2049 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 163 IPR035897 -
Tsu08g00600 2049 Gene3D - 1183 1340 IPR027417 -
Tsu08g00600 2049 Gene3D - 1347 1431 IPR042197 -
Tsu08g00600 2049 Gene3D - 359 444 IPR042197 -
Tsu08g00600 2049 SMART till_3 1022 1152 IPR000157 GO:0007165
Tsu08g00600 2049 SMART till_3 23 160 IPR000157 GO:0007165
Tsu08g00600 2049 ProSiteProfiles TIR domain profile. 1014 1178 IPR000157 GO:0007165
Tsu08g00600 2049 SUPERFAMILY "Winged helix" DNA-binding domain 1418 1526 IPR036390 -
Tsu08g00600 2049 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1021 2041 IPR044974 GO:0006952
Tsu08g00600 2049 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 1021 IPR044974 GO:0006952
Tsu08g00600 2049 ProSiteProfiles TIR domain profile. 22 186 IPR000157 GO:0007165
Tsu08g00600 2049 Pfam NB-ARC domain 207 443 IPR002182 GO:0043531
Tsu08g00600 2049 Pfam NB-ARC domain 1200 1429 IPR002182 GO:0043531
Tsu08g00600 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1183 1441 IPR027417 -
Tsu08g00600 2049 SUPERFAMILY L domain-like 1539 1836 - -
Tsu08g00600 2049 Gene3D - 189 348 IPR027417 -
Tsu08g00600 2049 PRINTS Disease resistance protein signature 221 236 - -
Tsu08g00600 2049 PRINTS Disease resistance protein signature 299 313 - -
Tsu08g00600 2049 PRINTS Disease resistance protein signature 712 728 - -
Tsu08g00600 2049 PRINTS Disease resistance protein signature 394 408 - -
Tsu08g00600 2049 Gene3D Ribonuclease Inhibitor 534 759 IPR032675 -
Tsu08g00600 2049 Gene3D Ribonuclease Inhibitor 1705 1847 IPR032675 -
Tsu08g00600 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 454 IPR027417 -
Tsu08g00600 2049 SUPERFAMILY L domain-like 550 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00600 Tsu-Chr8 6512068 6522806 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00600 23 823 WRKY Transcription Factor Family AT4G12020 33.499 1.37e-102 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00600 - - cam:101503346 1347.41