LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g00598	ATgtgttttgttgttattttcttGTTGCTTGTTTCAGTTTCACTATTCATAAGACGTGAAACTGTAACAAACGACGATGACAACAAAGGTTTTTCAGGTCCGACTAAATATGATGTCTTTATTAGCTTTCGAGGTGAAGACACACGCGAACGTTTTCTTAGCCATTTGGTTAAAGCTTTATCTACGAAGAAAATTTTAGCTTTTAAAGATAATCAGCTTGTTAAAGGAGATGAAATATTTTCATCACTTATGAAAGCAATTGAAACATCTTCCATTTCGTTGGTAATATTTTCACAGAATTATGCTTCTTCAGCGTGGTGTTTGAATGAACTTGTTAAAATTGTtgagtgcaaaaaaaaaaatggacggATTTTATTGCCTGTTTTCTTCTATGTGGAACCCTCAAATGTGAGGAAACAAAAGGGAACTTATGAAAATGCATTTGCTGAACATGAAAAAAGATATGATCTGACTAGGGTGCAACAATGGAGATCTGCTCTGAATGAATCTGCCAACTTAAGTGGATTTCCCATTTACTCGTCAGATTTTCCGGATGAAGCCGCACTAGTTGAAGGAATAGTTAACAGAGTGTTGAAAGAGTTTGAAAGCGTTAAGCGAATTAATTCAAAAGGACTTGTTGGAATTGGAAAACAAATTTCACATGTGGAATCATTGTTACAATTAGAGTCACAAGATGTTCGTGCTATTGGAATATGGGGGATGAGTGGTATAGGTAAAACAACCCTTGCAGAACAAGTATATAACAAACTCGGTTCTGATTACGAAGGTTGTTACTTTAAGGCTCATGTGAATGAAGAAACAAGAAGACGCGGAATTATGTCTTTAAAGGAAGAGCTTTATTCTACTCTATTAGGGGACCAAGATTTGAAAATTGACACACTAAATGGATTGCCATACTATGTTGAGAGAAGGCTTCCTCGTATGAAGGTTCTTGTTGTTCTTGATGATGTCAATGATCTACAACAACTAGAAACTTTAATTGGATCAAAACTTGATTTGTTTGGAAATGGTAGTAGAATAATCATCACAAGTGGAGACAAACAAGTACTATTTGCCGGAGGGGTCGATGATATATATGAAGTTAAGCCATTAAACTTTAATGACTCTCTTAGGCTTTTCAATTTAAATGcctttaaacaaaatcaaacaaatcaaaaagaGTACAAGGAGTTGTCTAAGATGATGGTTAAGTATGCTGAAGGAATTCCACTTGTTCTTAAAGTTTTGGGTGGTCTGCTTCATCGAAAAGATAAACAAGTATGGGAAGACTTTTTAGGGAggtttagaaaaaatattccaATTAAAACAGTTCATCCAATTTTCAGATTGAGTTACAATGATCTTGACGATCGTGAGAAGAAGATATTTCTAGACATTGCATGTTTTTTCAATGGATTACATCTCAAAGTTGACGACATACAACTATTGCTAAAAGACCATGATTATTCGGTTGGTGTTGAGTTGGAAAGTTTGAAGAATAAAGCTCTTATAACTATTTCTCCAGATAATGTTGTATCCATACACAACATTATACAACAAACAGCTTTGGAAATTGTTCGCGTAGAAGCCAAAGGCGACCGTGAAAAGCAAAGTCGACTACTGGATCCTTATGATATTTCTGATGTACTGAAAAATAACAAGGGGAGTGATGTTATTAGAAGCTTAGCTATCGATGTGTCGATAATTAAGGAGCTGCAGTTACATCCAAAGGTGTTTGCAAAAATGGAAAAACTACGATATTTGGACATTTATAGTAAGGGGTACTCTCATGATTTTGTCCAAAGTCGAAGGGGATTGTATCTTCCTCATGGGCTTGAATCTTTGCCAAATGAACTCAGATACCTTCGATGGGTACATTTCCCTTTCGGGTCCTTACCATCCAATTTTTCTGGTGAAAAACTTGTTGCATTGGACTTGCAGTACAGCAATCTGACCCAACTTTGGCATGAAGATTATAAGGatctttcaaatttaaaatatcttaaaCTTGATTCATCGTCATTCCTGGTGGAGTTTCCAGACTTGTCAAATGCTACTAATCTTGAAGTAATTGATCTTCGTCTCTGTACAGCATTGATTAGCATACATCCATCTGTCTTTACTCTCAATAAGCTTGAGAAATTGGACCTGGGTGGATGTCTTTCCCTCAGAAGCCTGAAAAGCAACGTCCGTTTAAGCTCCCTTCGTTATCTCTACCTTGCTGGTTGCACTGCACTAAGGGAGTTCTCAATAACCTCAAAGGAAATGGTAAAGTTGAATTTAGAATTCACAGGTATCAAACAACTACCATCATCaattggacttcaaaccaaacTTGAAAAGTTGCTTCTTGCACACAGTTACATTGAGAACTTGCCCGAAAGCATCAAGAATCTTACAAGGTTGAGTCATCTAGGCTTACAAAATTGTAGCAAGCTTCGAAGTCTACCAGAGCTATCTCCATCGTTGATAATTCTTGATGCCAGTGACTGTGTATCACTGAAGACTGTAAGTTTCACATCAACTGCTGTTCAAATGGTAACGGAAAACAAGACAAGGGTTTCCTTCTGGAATTGCCTGAAACTCGATGAACCTTCTCTCAAGGCTATTGGGTTGAATGCGCAGTTTAACATGGTGAAATTCACACGTCAACATATATCCATATCCCGTGATCATGATTatgatgttcaaggcacatatGTGTACCCGGGAAGCAATGTTCCAGAATGGTTATTGTATAGGACAACACATGATAACATGACTGTTGATCTCTCTTTTGGTAACCATTCATCTCCATTGGGCTTCATTTTTTGCTTCATTGTTCCACAAGTTCCATCACAGGGTTTCATTTTGAGATTTAGTATTAGTGTTGATGAAGGTGAAGATGATATCCAATTGTACTTGGATAGGCCAAGGCATGCAATTCAATCAGATCATGTGTGTTTAATATACTACCGAAGTTTTTCTCGCTATCTCAATAGCAGAGTTAAAGATCAGCCAAAGTTCAAAATTAAGGTTACGGCAGAATCACGAACACTTACAACACAGTATGTGCCATTAATGATGTTGAAAGGGTTTGGGTTCAGTCCAATAAACAACTCACAATATCTAAATTTCGTTCAACACATGGAAATGGCTGAAGAGGTGTTGGTGTCTTTCAAAGGTTTTGGTGTTGGTGTATGGTGCAGTGACTCTTGTTTAGCTTAG	3207	0.3552	MCFVVIFLLLVSVSLFIRRETVTNDDDNKGFSGPTKYDVFISFRGEDTRERFLSHLVKALSTKKILAFKDNQLVKGDEIFSSLMKAIETSSISLVIFSQNYASSAWCLNELVKIVECKKKNGRILLPVFFYVEPSNVRKQKGTYENAFAEHEKRYDLTRVQQWRSALNESANLSGFPIYSSDFPDEAALVEGIVNRVLKEFESVKRINSKGLVGIGKQISHVESLLQLESQDVRAIGIWGMSGIGKTTLAEQVYNKLGSDYEGCYFKAHVNEETRRRGIMSLKEELYSTLLGDQDLKIDTLNGLPYYVERRLPRMKVLVVLDDVNDLQQLETLIGSKLDLFGNGSRIIITSGDKQVLFAGGVDDIYEVKPLNFNDSLRLFNLNAFKQNQTNQKEYKELSKMMVKYAEGIPLVLKVLGGLLHRKDKQVWEDFLGRFRKNIPIKTVHPIFRLSYNDLDDREKKIFLDIACFFNGLHLKVDDIQLLLKDHDYSVGVELESLKNKALITISPDNVVSIHNIIQQTALEIVRVEAKGDREKQSRLLDPYDISDVLKNNKGSDVIRSLAIDVSIIKELQLHPKVFAKMEKLRYLDIYSKGYSHDFVQSRRGLYLPHGLESLPNELRYLRWVHFPFGSLPSNFSGEKLVALDLQYSNLTQLWHEDYKDLSNLKYLKLDSSSFLVEFPDLSNATNLEVIDLRLCTALISIHPSVFTLNKLEKLDLGGCLSLRSLKSNVRLSSLRYLYLAGCTALREFSITSKEMVKLNLEFTGIKQLPSSIGLQTKLEKLLLAHSYIENLPESIKNLTRLSHLGLQNCSKLRSLPELSPSLIILDASDCVSLKTVSFTSTAVQMVTENKTRVSFWNCLKLDEPSLKAIGLNAQFNMVKFTRQHISISRDHDYDVQGTYVYPGSNVPEWLLYRTTHDNMTVDLSFGNHSSPLGFIFCFIVPQVPSQGFILRFSISVDEGEDDIQLYLDRPRHAIQSDHVCLIYYRSFSRYLNSRVKDQPKFKIKVTAESRTLTTQYVPLMMLKGFGFSPINNSQYLNFVQHMEMAEEVLVSFKGFGVGVWCSDSCLA	1068

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g00598	1068	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	208	466	IPR027417	-
	Tsu08g00598	1068	Pfam	NB-ARC domain	225	432	IPR002182	GO:0043531
	Tsu08g00598	1068	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	26	1053	IPR044974	GO:0006952
	Tsu08g00598	1068	PRINTS	Disease resistance protein signature	311	325	-	-
	Tsu08g00598	1068	PRINTS	Disease resistance protein signature	707	723	-	-
	Tsu08g00598	1068	PRINTS	Disease resistance protein signature	406	420	-	-
	Tsu08g00598	1068	PRINTS	Disease resistance protein signature	235	250	-	-
	Tsu08g00598	1068	SMART	till_3	36	173	IPR000157	GO:0007165
	Tsu08g00598	1068	Gene3D	-	204	360	IPR027417	-
	Tsu08g00598	1068	Gene3D	-	371	456	IPR042197	-
	Tsu08g00598	1068	SUPERFAMILY	"Winged helix" DNA-binding domain	444	550	IPR036390	-
	Tsu08g00598	1068	SUPERFAMILY	Toll/Interleukin receptor TIR domain	32	176	IPR035897	-
	Tsu08g00598	1068	SUPERFAMILY	L domain-like	563	835	-	-
	Tsu08g00598	1068	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	26	1053	-	-
	Tsu08g00598	1068	Gene3D	Ribonuclease Inhibitor	550	720	IPR032675	-
	Tsu08g00598	1068	Pfam	TIR domain	36	206	IPR000157	GO:0007165
	Tsu08g00598	1068	Gene3D	Ribonuclease Inhibitor	730	864	IPR032675	-
	Tsu08g00598	1068	ProSiteProfiles	TIR domain profile.	35	201	IPR000157	GO:0007165
	Tsu08g00598	1068	Gene3D	-	34	203	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g00598	Tsu-Chr8	6492591	6499263	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g00598	31	820	WRKY Transcription Factor Family	AT4G12020	34.168	2.52e-111	379

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g00598	-		-	gmx:100802823	1181.39