Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00597 ATGGCTTATTCTTCACAATATAAAGAAATGTATGTCCTCCCCGGGATTATAATCATTGGATCAATTGTAATCGCTTTTATATTTTTCAGACTGACAATGCAAGGATGGTGTAACCTTATCAATCATGAACCTACCCTTCCTACAACAATCATATCTTATGATGAGAAATTTTCTGGTTGCATGAGTTTAGAGTCACATTCAATTACATTCATGTACAAGGAAGGTGATGCTGCGCAACAAGACATAAACCAGACGGAATGTGTTATCTGTTTAACAGTCTTTCAAGAAGACGAAAGTGTTCGGAAGCTTCATAGTTGCAAGCATGTGTTTCATACATCTTGCATTGATAAGTGGCTTGGTTCTCATTCGGGATGTCCGCTATGTCGCTCTAGGATTGATCAAGTAACTTCGCCAAATGAATCATTGGCAAATGATCACATGATTGTGGCCATTGTTGACTCTAGAATTTGA 471 0.3779 MAYSSQYKEMYVLPGIIIIGSIVIAFIFFRLTMQGWCNLINHEPTLPTTIISYDEKFSGCMSLESHSITFMYKEGDAAQQDINQTECVICLTVFQEDESVRKLHSCKHVFHTSCIDKWLGSHSGCPLCRSRIDQVTSPNESLANDHMIVAIVDSRI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00597 156 SMART ring_2 87 128 IPR001841 -
Tsu08g00597 156 CDD RING-H2_EL5_like 86 129 - -
Tsu08g00597 156 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 44 146 - -
Tsu08g00597 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Tsu08g00597 156 Pfam Ring finger domain 86 129 IPR001841 -
Tsu08g00597 156 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 44 146 IPR044675 -
Tsu08g00597 156 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Tsu08g00597 156 SUPERFAMILY RING/U-box 86 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00597 Tsu-Chr8 6485673 6486143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00597 67 149 C3H Transcription Factor Family AT5G17600 44.048 9.04e-19 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00597 - - gmx:102661636 190.66