Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00591 ATGGATTATGCAGGTAGAGACGGTGCGTTTGACTTAGCCTCTGTTGCAAAAGATAATATGTATGCCCAACTTTGGATTAGATGTGCTAATATTGGATCTACATACATCCCTAAGATTGGGGAGAAGCTTTTCTACTTCCCACAAGGGCATCTAGAACAGATCGCAATACACCATCAAAGAGATCAAAACATGGAAATTCCTAACTTTGATCTTCCATCCAAAATTTTATGCATTGTTCTTGGTGTTCAGTTACAGGTACATGATAACACAGATGAGGTTTTTGCTCTTGTTACATTAATCCCGTCGAAGCAACAAGAGTTTATGGTAGAGGACCATGATGCAGTTGATGATAGTCCTAGTGAAAGCTACTCTTTCACTAGGATATTGAATTCAACAGAAGCATGTAGACATGCCGCCGCTGGACTTTATATTCCCAGCCAACATGCAGATAGATGTTTTCCCACAATGGATCCTGCTGTTCAACCACCAATGCAAGATCTAGTGGCAAAGGACTTGCATGGAATTGAGTGGAATTTCCGACATATTTACTGTGaTCATCAGAGAGCACACATGCTCACAAGTGGTTGGAGTACGTTCGTAAATTCTAAAAAACTTGTTCATGGAGATTCATGCATTTTCGTCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCGTAGAGCAATGAAACAACATAGTAATATAACATCGTCTCCACTTGGATCAATGTGTGCTGCTTCCCATGGTGTTTCTACAGGAACTATGTTCCATGTCCAGTACCATCCTTGGATTTCTCCCTTTGGGTTTATGATCCCTCTGAAAACTTATGTTGAGTCCATTGAAAGAGACTATTTCATTGGAACGAGGGTACACATGTTGCCAAAAGTTGAAGGAACTTCAAGAAGATATGGTACAATTGTTGGCAATGAAGATATTGATCCCATTAGGTGGCCGGGATCTGAATGGAGATGTATCAAGGTGCAATGGGATTCCACACCAAATACTTCTACACAACTTGAAAGCGTTTGTCCTTGGTGGATTGAGCCTTTGGGATCTCCCAAGATTAAGGGCTTTCCTATTCTCCCTTTATCAAATGAgagtaagttttttttacattcctttctcaatttttttagatTTATTGGGAGTTCATCCACACCTAAATATCACACTGTGGATGTGGACATGGACATGCAAGTGCATGAGTATGCTTGCCTTGAGCCGAGCATGGCATCTCGATAG 1242 0.3994 MDYAGRDGAFDLASVAKDNMYAQLWIRCANIGSTYIPKIGEKLFYFPQGHLEQIAIHHQRDQNMEIPNFDLPSKILCIVLGVQLQVHDNTDEVFALVTLIPSKQQEFMVEDHDAVDDSPSESYSFTRILNSTEACRHAAAGLYIPSQHADRCFPTMDPAVQPPMQDLVAKDLHGIEWNFRHIYCDHQRAHMLTSGWSTFVNSKKLVHGDSCIFVRGENGEIGIGIRRAMKQHSNITSSPLGSMCAASHGVSTGTMFHVQYHPWISPFGFMIPLKTYVESIERDYFIGTRVHMLPKVEGTSRRYGTIVGNEDIDPIRWPGSEWRCIKVQWDSTPNTSTQLESVCPWWIEPLGSPKIKGFPILPLSNESKFFLHSFLNFFRFIGSSSTPKYHTVDVDMDMQVHEYACLEPSMASR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00591 413 CDD B3_DNA 124 227 IPR003340 GO:0003677
Tsu08g00591 413 PANTHER AUXIN RESPONSE FACTOR 13 351 - -
Tsu08g00591 413 Gene3D - 284 354 - -
Tsu08g00591 413 Pfam Auxin response factor 246 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu08g00591 413 SUPERFAMILY DNA-binding pseudobarrel domain 118 234 IPR015300 -
Tsu08g00591 413 Pfam B3 DNA binding domain 140 228 IPR003340 GO:0003677
Tsu08g00591 413 Gene3D - 123 229 IPR015300 -
Tsu08g00591 413 ProSiteProfiles B3 DNA-binding domain profile. 167 229 IPR003340 GO:0003677
Tsu08g00591 413 SMART B3_2 125 229 IPR003340 GO:0003677
Tsu08g00591 413 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 351 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00591 Tsu-Chr8 6399095 6406058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00591 6 360 B3 DNA Binding Superfamily AT5G62000 42.507 2.12e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu08g00591 B3 5.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00591 - - cam:101505502 468.388