Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00588 ATGAAGAACTCATGGCCATGGGGGACTTGTTCTGAATCTGATGTGCAAAAATCATCGATATCCGAAAATCTGACCTTGAAAATGAGTGTTTTGCCACAACAATGTCATGAGATTAAGCCAATAGATTTTCAATTTCAAGACCAAGATTCTTCTTCTACTCAATCAACAGGTCAATATTATATGCAAGTCGGTTCGAGACACTCATGTCCAATTTCTGTCAAGTATACCAATACTTCTGCTTGTTCAACACTTAGCGAAACTGCAGAGGGTCGCGATTTTACTTTGCCTCCGTCTCAACTGAATCACAACCAATCACATGCTCATGTTGCATTCCCTCATGCTGAAGCAGGCTTTAGTGGCCTACTAGCCGCTCCATATGGACCACAGAGTAATATTCATCATTCTCAGCTAGTAGGAATGGCTCCGGTTCGAATTCCTCTGCCTCTTGAGCTTCATGAGGAGCCAATATATGTGAATGCGAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGTGCAAAGCTAGAAGCACAGAACAAACTCATAAAAAATCGGAAACCATATATACACGAGTCACGCCATCTGCACGCATTGAAGAGAGCTAGAGGTTCTGGTGGACGTTTTCTAAACACCAAAAAGCTCCAAGATCATGGCCTTAATGTTTCCGCCGCTACTCGGCTGAATCCGAGTGGAAATGTGCCCGAATTAAAGGTACATCGAGTAGAAAACTATAGAGATGGTGCTTCCACAACCACCTGTTCTGATGTCACGAGTGCTTCTAATAGTGATGACATGTTCCAACAAGACGAATCCAACTTCAGATCATGTGGTTACCCTTCTCATATGTAG 852 0.4284 MKNSWPWGTCSESDVQKSSISENLTLKMSVLPQQCHEIKPIDFQFQDQDSSSTQSTGQYYMQVGSRHSCPISVKYTNTSACSTLSETAEGRDFTLPPSQLNHNQSHAHVAFPHAEAGFSGLLAAPYGPQSNIHHSQLVGMAPVRIPLPLELHEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLIKNRKPYIHESRHLHALKRARGSGGRFLNTKKLQDHGLNVSAATRLNPSGNVPELKVHRVENYRDGASTTTCSDVTSASNSDDMFQQDESNFRSCGYPSHM 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00588 283 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 9 275 - -
Tsu08g00588 283 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 154 209 IPR001289 GO:0003700|GO:0006355
Tsu08g00588 283 SMART cbf3 151 212 IPR001289 GO:0003700|GO:0006355
Tsu08g00588 283 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 9 275 IPR001289 GO:0003700|GO:0006355
Tsu08g00588 283 PRINTS CCAAT-binding transcription factor subunit B signature 186 209 IPR001289 GO:0003700|GO:0006355
Tsu08g00588 283 PRINTS CCAAT-binding transcription factor subunit B signature 155 177 IPR001289 GO:0003700|GO:0006355
Tsu08g00588 283 MobiDBLite consensus disorder prediction 249 272 - -
Tsu08g00588 283 ProSitePatterns NF-YA/HAP2 subunit signature. 157 177 IPR018362 GO:0003677|GO:0016602
Tsu08g00588 283 Gene3D - 152 213 - -
Tsu08g00588 283 ProSiteProfiles NF-YA/HAP2 family profile. 152 212 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00588 Tsu-Chr8 6375099 6377109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00588 4 281 CCAAT-HAP2 Transcription Factor Family AT3G14020 44.186 6.58e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tsu08g00588 CBFB_NFYA 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00588 K08064 - gmx:100500765 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00588 08 6375099 6377109 Tsu08g00588 08 6375099 6377109 ECH
Tsu02g05336 02 61968110 61982918 Tsu08g00588 08 6375099 6377109 PCT