Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00587 ATGGACTCGCGCACACAGTATAATCCTCGTACCGTCGAAGAAGTTTTCAGAGATTTCAAAGGTCGTCGTGCTGGTCTAATCAAAGCTCTAACCACTGATGTTGAAGATTTCTATAACCAATGTGATCCTGAGAAGGAGAATCTATGCCTGTACGGCTTTCCTAGTGAGCAGTGGGAAGTTAATTTACCTGCGGAAGAAGTTCCACCTGAGCTTCCTGAGCCTGTGCTCGGCATTAACTTTGCTAGGGATGGCATGCAAGATAAAGATTGGCTATCTTTGGTTGCTGTTCATAGTGATTCATGGCTAATTGCTATTGCCTACTACTTTGGAGCCAGATTTGGTTTTGACAAATCTGACagGAAACGCCTTTTCAATATGATTAATGAACTGCCGTCAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGGTTTAAACCACAGTGGCAGCAAATCCAAGTCTAACTCGAAAGcgCAGCGCGCTCCAGAACCCCAGGTGAAGCCAACAAAGGCAATGGAACCTAAAGACGAGGAAGAAGACCTggaggaggaagatgaagatgaacacGGAGATACTTTATGCGGTGCATGTGGTGAGAATTATGGCACTGATGAATTCTGGATTTGCTGTGACATATGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACACCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCATCATGCAGTAGCAACAAGAGAGCTCGCCCTTGA 768 0.4258 MDSRTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQDKDWLSLVAVHSDSWLIAIAYYFGARFGFDKSDRKRLFNMINELPSIFEVVTGAAKKQVKEKSSGLNHSGSKSKSNSKAQRAPEPQVKPTKAMEPKDEEEDLEEEDEDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRARP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00587 255 PANTHER CPG BINDING PROTEIN 6 255 IPR045104 GO:0006355|GO:0042393
Tsu08g00587 255 MobiDBLite consensus disorder prediction 145 196 - -
Tsu08g00587 255 CDD PHD_AL_plant 200 250 IPR044104 -
Tsu08g00587 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Tsu08g00587 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Tsu08g00587 255 Pfam PHD-finger 201 249 IPR019787 -
Tsu08g00587 255 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Tsu08g00587 255 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 255 - -
Tsu08g00587 255 SMART PHD_3 200 248 IPR001965 -
Tsu08g00587 255 MobiDBLite consensus disorder prediction 150 169 - -
Tsu08g00587 255 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Tsu08g00587 255 SUPERFAMILY FYVE/PHD zinc finger 190 250 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00587 Tsu-Chr8 6366411 6372265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00587 7 254 Alfin-like Transcription Factor Family AT3G42790 72.177 2.94e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tsu08g00587 Alfin 8.2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00587 - - gmx:100170700 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00587 08 6366411 6372265 Tsu02g05337 02 61986173 61990491 ECH
Tsu08g00587 08 6366411 6372265 Tsu08g00587 08 6366411 6372265 ECH
Tsu02g05337 02 61986173 61990491 Tsu08g00587 08 6366411 6372265 PCT