Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00585 ATGGACATGAGTAATGTAGCTGAGGAAGAATCAGAATCAGAGGAAGAGATTCATGTTCCAGCTGAAATTGATTGGCAAATGCTTGATAAATCGAAGTTTTTCTTCCTTGGTGCTGCTTTGTTTTCTGGTGTTTCAGCAACATTGTATCCTGTTGTTGTGTTGAAAACTAGGCAGCAAGTTGCTCAATCACAAGTTTCTTGTATTAAGACAGCGTTTTCGTTGATTAAAGGTGAGGGATTTAGAGCGTTGTATCGTGGTTTCGGTACTTCGTTGATGGGTACTATCCCTGCTAGAGCTTTATACATGGCTGCACTTGAGGTTACTAAAAGTAATGTTGGGACTGCTACTGTTGGTTTAGGTCTTGCTGAACCGACTGCTGCTGCAATTGCTAATGCGGTTGCTGGTTTGACTGCGGCTTTGGCGGCTCAACTTGTGTGGACCCCGGTTGATGTTGTGAGCCAAAGGTTGATGGTTCAAGGTGGTTGTAATTCAAGTGATCCAAAGGGTTCATCTGTTAGGTATGCTAATGGGATTGATGCATTTAGGAAAATTATGAGGACAGATGGTCCTAGGGGTTTGTATAGAGGTTTCGGGATATCGGTTGTGACGTATGCGCCTTCAAATGCAGTTTGGTGGGCTTCATATTCTGTTGCACAGAGGATGGTTTGGGGTGGAGTTGGATGTTACTTGAGTAACAAGAAAGGTGGGGAGGGAAGCGATAATAACAATGGGGGTAATGTGTTAAGGCCGGATACGAAAACGGTTATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCAGGAGGCATGTCTGCTTTGATTACTATGCCGTTGGATACAATCAAGACAAGGCTGCAGGTCTTGGATGGCGATGAGAATGGCCGTCGTGGACCAACGGTGATGCAGACAGTTAGAAGTTTAGTTAAGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCTAGATGGGCTTCAATGTCTGTGTCTGCAACAACAATGATCACAACCTATGAGTTCCTTAAACGGCTTTCCGCAAAGAATCAAGAGGTTTTGACATGA 1059 0.4466 MDMSNVAEEESESEEEIHVPAEIDWQMLDKSKFFFLGAALFSGVSATLYPVVVLKTRQQVAQSQVSCIKTAFSLIKGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVGLGLAEPTAAAIANAVAGLTAALAAQLVWTPVDVVSQRLMVQGGCNSSDPKGSSVRYANGIDAFRKIMRTDGPRGLYRGFGISVVTYAPSNAVWWASYSVAQRMVWGGVGCYLSNKKGGEGSDNNNGGNVLRPDTKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTVMQTVRSLVKEGGWMACYRGLGPRWASMSVSATTMITTYEFLKRLSAKNQEVLT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00585 352 SUPERFAMILY Mitochondrial carrier 26 340 IPR023395 -
Tsu08g00585 352 Pfam Mitochondrial carrier protein 128 222 IPR018108 -
Tsu08g00585 352 Pfam Mitochondrial carrier protein 258 347 IPR018108 -
Tsu08g00585 352 Pfam Mitochondrial carrier protein 40 111 IPR018108 -
Tsu08g00585 352 Gene3D Mitochondrial carrier domain 33 350 IPR023395 -
Tsu08g00585 352 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 5 349 - -
Tsu08g00585 352 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 5 349 - -
Tsu08g00585 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 221 IPR018108 -
Tsu08g00585 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 111 IPR018108 -
Tsu08g00585 352 ProSiteProfiles Solute carrier (Solcar) repeat profile. 254 343 IPR018108 -
Tsu08g00585 352 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Tsu08g00585 352 PRINTS Mitochondrial carrier protein signature 86 106 IPR002067 GO:0055085
Tsu08g00585 352 PRINTS Mitochondrial carrier protein signature 194 212 IPR002067 GO:0055085
Tsu08g00585 352 PRINTS Mitochondrial carrier protein signature 263 285 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00585 Tsu-Chr8 6356530 6358403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00585 5 349 Chloroplast and Mitochondria Gene Families AT1G72820 73.276 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00585 K15121 - gmx:100789089 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00585 08 6356530 6358403 Tsu08g00585 08 6356530 6358403 ECH