Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00566 ATGGAAGACATTACTAGAGAtgtattaagaaaattaaaccaCAAGTGCACACATGAAATTACATGTAATTTCATACGCGATGAAAACTATTGGAGCATTCAATCTTTAATAAAATCTGATTCatcaaaagttcaaatcatTGGACTTTGGGGTATGGGGGGAATAGGTAAGACAACCCTTGCTGCTACTATGTTTCAAAGGTTCTCTTCCAATTATGAAGGCAGCTGCTTCTTAGAAGATGTGCCAAATGAATCAATAAGTCATGAGATCAAATACACACGCAACAAACTTCTTTCCAAGTTACTAAAGGAAGATCTTGATATTGACACTTCTAAATTAATCCCACCCGTGATTCTTAGAAGACTCAAACGAATGAAATCTTTTATTGTACTAGATGATGTACATACTTTAGAACTTCTGCCAAACTTGGTTGGAGTGGGGTGTGGTTGGCTAGGAGTTGGTAGCACAGTCATTGTAACAACTAGAGATAAACATGTGCTAATAAGTGGAGGAATTGAAAAAATTCATCAAGTTAAGAAGATGAACTCCCAAAATTCTCTCCAACTTTTTAGTTTGAATGCTTTCGAAAGTGTCTTACCTAAGGAGGGGTATGTGGAGCTCTCACAAAGAGCAATTGATTATGCCGAAGGCAACCCTTTAGCTCTAAAAATATTAGGATCATTTTTTCGACGTTGTAAAAGTGAAATAGAATGGAACAATGCACTAGCTAAACTTAAGGAAATTCCCAATGCCGAAATTGATAAGATATTGAGATGGAGTTATAATGAATTGGATGATAAAGAGAAGAATATATTTCTGGACATTGCATGCTTTTTCAAAGGACATGAAAGGGAAACGataacaaaaacattaaatgAGTGTGGTTTCTATGCAGATATAGGAATAAGACTTCTTTTAGACAAGGCTCTTATAAGACTTGACTTCAGAAATCGCATACAAATGCATGACTTGATCCAAAAAATGGGCAAACAAATTGTTCGTGAAGAATCTCTTAAATTTCCCGAACAACGCAGTAGATTATTTGATCCTAAGGAAGTTTGTCACGTACTGAAAGATAATAGTGTAAGAAATGATACCCTCACTTGCCTTGCTAAACATAAGTACATTTTCTTTCTAGAAAATGCAACTTACTACATAAATACTAACAttgagatttatttattttttcaccagGGAACAAATATTGTTGAAGCCATACTTTTAGATTCTAATCAATGTACAAATATCAATTTAAGTCCGAAAGTATTTGAAAAGATGGAAAACCTAAGGTTACTTGCTTTTCGAGACCACAAGGGAATCAAATCTGTAAGCCTTCCACGAGGTCTTGACTATTTGCCAGAAAATCTAAGATATTTTTCGTGGGATGGATATCCATTGAAGTCTCTGCCTTCAACCTTTTCTCCTGAAATGCTTGTGCAGCTTTCCCTGAAAGAAAGTCGTGTAGAAAAACTTTGGGATGGAGAAATGTATTTGCCAAATTTAGAGATACTTGACCTCACTGGCTCCAAAAAGTTGATAGAGTGTCCAAATGTGTCTGGTTCCCCATATCTAAAAGATGTAATACTTAGTAAATGTGAAAGCTTGCCTGAAGTTGATTCATCAATTTTCCATCTCCAAAAGCTTGAAGGATTAATCATGTCTGGATGTAAGTCACTTAAGACCCTTTCCAGTAACACTTGTTCACCAGCCCTCCGTCAATTGAATGTTGTGGATTGCGTCAATCTCCAAGATTTCTCAGTCACATTTGCTTCCGCTGATCGTTTGACTTTGGGTTTTTCAAATAGTTGGAATGAACTTCCATCATCATTattgaatacaaaaaatcttGAATCCTTTCAATTTCCTATGATTAAATGTCTTGTGGATCTTCCTGAAAACTTTTGCGATTCTATTTGGCTTTTGAGTCCACCGAATCGTGAACATGACCCTTCCATTACCCTACATAAAATACTTCATGGTCCTGCCTTCGTCTGTGTAAAACATTTAACATTGTATAGTATTACTATCTTAACTGAAATCCCAAACAGTATCTCCTTACTATCATCTTTAGAGTCTTTAACACTATTTAGTATTGGCATTAGAAGCTTGCCTGAAACCATTAAGTATCTTCCCCGACTCTATGAACTTTGTGTTCATGATTGTCAAATGCTTCAATCTATTCCAATGTTTTCAAAGTTCATTCCATTTTTCGTTGTCTGGAATTGTGAATCTCTTGAGACAGTGCTGAGTTCAATGGGTAAATCATATCTCAAACCCAATCCTCGTACTGTTAGTCTCCTTAACTGCAAAAAATTGGAACCTCATTCGTACCATACAGTTCTGAAAGATGCTATTGCTGGGATTGAACTTGAAGCAAGACTAAATTCAGGAAATGAAGAAGATAATACCATTCAGTACCTGTTACCGGCCGCTATGCCAGGCAGAGAATATTGGTCTCATTACAGTTCTACACAAGTCTCTTTCACTCTTGAGCTTCCTCCTAATTTGTTGGGTTTCTCCTACTACTTGGTTCTTTCTCAAGGCCATGTGGGATATCTTGTAGATTTTGGATGTGACTGCCACTTGGACAATATTTCAGGTCAAAGGATCTATATAAGAAGTTTCCCAAGAGTCAACATCTTCACTTTTGGCTTGTTTTTTAACGATGATGAGAATTCAATCCGCATAAAGTCAGATCATGTGATTTTATGGTATGATCCAATAAGTTGCAAGCAGATAATGGAAGAAATAAAAGCCATTAATCATGTGAACGGCACCGGTTACAATCCAAAGCTTACATTTACATTCTTTGTTAATGAAACTTTACATGATCAAGTAACGATAAAAGAGTGTGGGTTTCGCTGGATATATCATGAAGAAACAGTTtcttcaacaatttttaaatcccatgatgaagatgaagaaacaGTTCCTCCAACAAGGAAATTACAGCAACGTGTCTTTGGAACTCCAGTGCCAAGCCTAGAATTAGTTGAAACAAAAGGCTTGAGGTATTTACTTGAATAA 3027 0.3489 MEDITRDVLRKLNHKCTHEITCNFIRDENYWSIQSLIKSDSSKVQIIGLWGMGGIGKTTLAATMFQRFSSNYEGSCFLEDVPNESISHEIKYTRNKLLSKLLKEDLDIDTSKLIPPVILRRLKRMKSFIVLDDVHTLELLPNLVGVGCGWLGVGSTVIVTTRDKHVLISGGIEKIHQVKKMNSQNSLQLFSLNAFESVLPKEGYVELSQRAIDYAEGNPLALKILGSFFRRCKSEIEWNNALAKLKEIPNAEIDKILRWSYNELDDKEKNIFLDIACFFKGHERETITKTLNECGFYADIGIRLLLDKALIRLDFRNRIQMHDLIQKMGKQIVREESLKFPEQRSRLFDPKEVCHVLKDNSVRNDTLTCLAKHKYIFFLENATYYINTNIEIYLFFHQGTNIVEAILLDSNQCTNINLSPKVFEKMENLRLLAFRDHKGIKSVSLPRGLDYLPENLRYFSWDGYPLKSLPSTFSPEMLVQLSLKESRVEKLWDGEMYLPNLEILDLTGSKKLIECPNVSGSPYLKDVILSKCESLPEVDSSIFHLQKLEGLIMSGCKSLKTLSSNTCSPALRQLNVVDCVNLQDFSVTFASADRLTLGFSNSWNELPSSLLNTKNLESFQFPMIKCLVDLPENFCDSIWLLSPPNREHDPSITLHKILHGPAFVCVKHLTLYSITILTEIPNSISLLSSLESLTLFSIGIRSLPETIKYLPRLYELCVHDCQMLQSIPMFSKFIPFFVVWNCESLETVLSSMGKSYLKPNPRTVSLLNCKKLEPHSYHTVLKDAIAGIELEARLNSGNEEDNTIQYLLPAAMPGREYWSHYSSTQVSFTLELPPNLLGFSYYLVLSQGHVGYLVDFGCDCHLDNISGQRIYIRSFPRVNIFTFGLFFNDDENSIRIKSDHVILWYDPISCKQIMEEIKAINHVNGTGYNPKLTFTFFVNETLHDQVTIKECGFRWIYHEETVSSTIFKSHDEDEETVPPTRKLQQRVFGTPVPSLELVETKGLRYLLE 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00566 1008 Gene3D Ribonuclease Inhibitor 396 598 IPR032675 -
Tsu08g00566 1008 Gene3D - 8 171 IPR027417 -
Tsu08g00566 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 367 IPR044974 GO:0006952
Tsu08g00566 1008 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 409 874 IPR044974 GO:0006952
Tsu08g00566 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 275 IPR027417 -
Tsu08g00566 1008 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 3 367 - -
Tsu08g00566 1008 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 409 874 - -
Tsu08g00566 1008 SUPERFAMILY "Winged helix" DNA-binding domain 252 358 IPR036390 -
Tsu08g00566 1008 Gene3D - 180 265 IPR042197 -
Tsu08g00566 1008 Gene3D Ribonuclease Inhibitor 651 801 IPR032675 -
Tsu08g00566 1008 SUPERFAMILY L domain-like 406 774 - -
Tsu08g00566 1008 PRINTS Disease resistance protein signature 496 512 - -
Tsu08g00566 1008 PRINTS Disease resistance protein signature 46 61 - -
Tsu08g00566 1008 PRINTS Disease resistance protein signature 121 135 - -
Tsu08g00566 1008 PRINTS Disease resistance protein signature 215 229 - -
Tsu08g00566 1008 Pfam NB-ARC domain 33 264 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00566 Tsu-Chr8 6211791 6215956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00566 1 716 WRKY Transcription Factor Family AT4G12020 31.362 9.38e-79 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00566 - - mtr:MTR_8g018480 1240.71