Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00563 ATGGTAGAATCCGAAAGTATTACCACTGCTATTGCCATTAACGCCGGCCGAAATAGCCAATACGCCGTGAAATGGGCCGTCGACCGCCACCTAAAAAAGAATTCCAAATGTATCCTCATTCATGTTCGAACCAAGCCCATCACTAATTCCAATGATCATGTTGATGATGTTCCTAAACATGGTCGTCCACCAACACAAGAAGAATTgcatcaattctttcttcccTTCCGTGGGTTTTGTGCTAGAAAAGGGATTGAGGCAAAGGAATTGGTCTTACATGACATTGATGTTCCTAATGCACTTACtgattttgttgttgacaaCTCTATCAACaatgttgttgttggtggttgTGCTTCCCCTTGGAGTGCTTTTATAAGGAAATTTAAAGAAGTAAATATTGCATCTTCCTTAGCTAAATCTTTACCAGAGTCATGTACATTACATGTTATATCAAAAggaaaagtacaaaaaattCAACCAAGAGGGCCTCCTATTCCTCAACCTCAAAATATTGAAGTCACACCAACTAGATCTTTAAGAGACATGGTTACACTATTGCAAAATGTAAATAAGTTTCTTAATCATACCCCTGATTCTGATGATATAAACAGGAGCTCATCCATAGATGCAAACAAATTTTGGGAATCATTGCATGATGTGAAAGATGTTATACCATTAACACCACATATATCAAATGTTGTTGAAGATAACTATTCACCAAAAGGACCAAAATTTGACAACTATTCACCAAGAGGACCAATATTTTCAATAGGAAGCACCTCATCACAAACTTCATCAAATAGAAGTTCTCCTCCCCATAGTAATGATAGTTTAGGGAAAATAAGCAATAATAATGATACCAATTGCCCATTTTCTCCAAAACCACCGATAAGCATCGAGACagaaataatgaaattaaaactAGAATTGAAGAAAGCATCAGAGCAATATGGTATAGTGTGCAAAGAATCTATTTTAGCAAAACAGAAGGCAAATGAGCTTGAAAAGTTTAGACAAGAAAAAGAACGGAATGTCGAAAAAGCAAAGCTTGCTGAAGAGGCTGCATTGGCTTTAGCAGAAGTAGAGAGACAAAAGGCGAAGGCGGCTTTAGAATCTGCCGAAATGTCGCAGCGTCTAGCAGAAATGGAAACTCAAAAGAGAAAACTAGCTGAATTAAAAGCTaaaaatgatgaagaagataggAAAAGAACAATACATGATGTTGTGTTTAATAACATTGCATATAGAAGATACAATATTAAAGAAATTGAAGTTGCAACCAATGGTTTTGCCAATGCTCTCAAAATTGGTGAAGGAGGATATGGACCTGTTTTTAAAGCTGTACTTGATCACACTGTTGTTGCCATAAAAGTTCTTAGACCTGATTTAGCCCATGGAGAGAGGCAATTTCAACAAGAGGTTCTTGTTTTGAGCACCATAAGACATCCCAACATGGTGCTCCTTCTAGGTGCATGCCCGGAGTTTGGATGCCTTGTGTACGAACACATGGAAAATGGAAGTTTAGAAGATCGTCTATTCCGAAAAGGCAATAGTCCACCAATTCCATGGAAAAATCGTTTCAAAATAGCATGTGAAATTGCGACTGGCCTTCTTTTCCTTCACCAAAGAAAGCCTGAGCCACTAGTACACCGCGATTTGAAACCAGGAAACATTCTCTTAGACAAAAACTATGTTAGCAAGATCAGTGACGTTGGTTTGGCACGACTCGTTCCAGCCTCAGTAGCTAACAAAACTACTCAATATCGCATGACAGATATATTTTCATTAGGTGTAGTGTTACTACAAATTATTACTGCAAAGCCTCCAATGGGATTGTCTCATCTGGTTGAAGAAGCTATCCAAAAAGGGGACTTCATAGATGTGCTTGATTCAAGTGTGCCAGATTGTCCTATTGAAGAGGCTTTATCATTTGCTAAGTTGGCCATAAAATGTTGTGAGTTAAGAAAACGTGATAGACCTGATCTTGGTACTGTTATTTTGCCAGAGTTGCATAGAATATCACAAATTTGGGACTGTGGTGAAGATTGA 2052 0.3626 MVESESITTAIAINAGRNSQYAVKWAVDRHLKKNSKCILIHVRTKPITNSNDHVDDVPKHGRPPTQEELHQFFLPFRGFCARKGIEAKELVLHDIDVPNALTDFVVDNSINNVVVGGCASPWSAFIRKFKEVNIASSLAKSLPESCTLHVISKGKVQKIQPRGPPIPQPQNIEVTPTRSLRDMVTLLQNVNKFLNHTPDSDDINRSSSIDANKFWESLHDVKDVIPLTPHISNVVEDNYSPKGPKFDNYSPRGPIFSIGSTSSQTSSNRSSPPHSNDSLGKISNNNDTNCPFSPKPPISIETEIMKLKLELKKASEQYGIVCKESILAKQKANELEKFRQEKERNVEKAKLAEEAALALAEVERQKAKAALESAEMSQRLAEMETQKRKLAELKAKNDEEDRKRTIHDVVFNNIAYRRYNIKEIEVATNGFANALKIGEGGYGPVFKAVLDHTVVAIKVLRPDLAHGERQFQQEVLVLSTIRHPNMVLLLGACPEFGCLVYEHMENGSLEDRLFRKGNSPPIPWKNRFKIACEIATGLLFLHQRKPEPLVHRDLKPGNILLDKNYVSKISDVGLARLVPASVANKTTQYRMTDIFSLGVVLLQIITAKPPMGLSHLVEEAIQKGDFIDVLDSSVPDCPIEEALSFAKLAIKCCELRKRDRPDLGTVILPELHRISQIWDCGED 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00563 683 MobiDBLite consensus disorder prediction 254 295 - -
Tsu08g00563 683 Gene3D HUPs 9 140 IPR014729 -
Tsu08g00563 683 CDD STK_N 8 154 - -
Tsu08g00563 683 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 8 677 - -
Tsu08g00563 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 549 561 IPR008271 GO:0004672|GO:0006468
Tsu08g00563 683 Gene3D Phosphorylase Kinase; domain 1 410 503 - -
Tsu08g00563 683 Pfam Protein kinase domain 435 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00563 683 PANTHER OS02G0152300 PROTEIN 8 677 - -
Tsu08g00563 683 MobiDBLite consensus disorder prediction 234 296 - -
Tsu08g00563 683 SMART serkin_6 431 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00563 683 Gene3D Transferase(Phosphotransferase) domain 1 504 679 - -
Tsu08g00563 683 SUPERFAMILY Protein kinase-like (PK-like) 408 666 IPR011009 -
Tsu08g00563 683 Coils Coil 328 403 - -
Tsu08g00563 683 ProSiteProfiles Protein kinase domain profile. 431 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g00563 683 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00563 Tsu-Chr8 6118216 6123380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00563 9 677 Receptor kinase-like Gene Family AT1G17540 43.466 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu08g00563 Pkinase 4.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00563 - - gmx:100799611 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g00563 08 6118216 6123380 Tsu08g00563 08 6118216 6123380 ECH
Tsu08g00563 08 6118216 6123380 Tsu02g05340 02 62001190 62004149 PCT